Strain Fitness in Shewanella amazonensis SB2B around Sama_0121

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0120 and Sama_0121 are separated by 16 nucleotidesSama_0121 and Sama_0122 overlap by 17 nucleotidesSama_0122 and Sama_0123 overlap by 1 nucleotides Sama_0120: Sama_0120 - molybdopterin biosynthesis MoeA protein, putative (RefSeq), at 133,572 to 135,371 _0120 Sama_0121: Sama_0121 - molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq), at 135,388 to 135,978 _0121 Sama_0122: Sama_0122 - ABC transporter, ATP-binding protein (RefSeq), at 135,962 to 136,654 _0122 Sama_0123: Sama_0123 - ABC transporter, permease protein (RefSeq), at 136,654 to 137,361 _0123 Position (kb) 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 134.430 kb on - strand, within Sama_0120at 134.430 kb on - strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.504 kb on + strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.505 kb on - strand, within Sama_0120at 134.508 kb on + strand, within Sama_0120at 134.509 kb on - strand, within Sama_0120at 134.509 kb on - strand, within Sama_0120at 134.510 kb on - strand, within Sama_0120at 134.706 kb on + strand, within Sama_0120at 134.754 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.850 kb on - strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.851 kb on + strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.852 kb on - strand, within Sama_0120at 134.891 kb on + strand, within Sama_0120at 134.916 kb on + strand, within Sama_0120at 134.916 kb on + strand, within Sama_0120at 134.916 kb on + strand, within Sama_0120at 134.917 kb on - strand, within Sama_0120at 134.972 kb on + strand, within Sama_0120at 134.972 kb on + strand, within Sama_0120at 134.972 kb on + strand, within Sama_0120at 134.972 kb on + strand, within Sama_0120at 134.973 kb on - strand, within Sama_0120at 134.973 kb on - strand, within Sama_0120at 134.973 kb on - strand, within Sama_0120at 134.973 kb on - strand, within Sama_0120at 135.006 kb on + strand, within Sama_0120at 135.006 kb on + strand, within Sama_0120at 135.006 kb on + strand, within Sama_0120at 135.006 kb on + strand, within Sama_0120at 135.007 kb on - strand, within Sama_0120at 135.007 kb on - strand, within Sama_0120at 135.029 kb on + strand, within Sama_0120at 135.029 kb on + strand, within Sama_0120at 135.030 kb on - strand, within Sama_0120at 135.039 kb on + strand, within Sama_0120at 135.039 kb on + strand, within Sama_0120at 135.039 kb on + strand, within Sama_0120at 135.040 kb on - strand, within Sama_0120at 135.040 kb on - strand, within Sama_0120at 135.050 kb on + strand, within Sama_0120at 135.050 kb on + strand, within Sama_0120at 135.051 kb on - strand, within Sama_0120at 135.051 kb on - strand, within Sama_0120at 135.051 kb on - strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.187 kb on + strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.188 kb on - strand, within Sama_0120at 135.207 kb on - strandat 135.252 kb on + strandat 135.316 kb on + strandat 135.316 kb on + strandat 135.316 kb on + strandat 135.317 kb on - strandat 135.317 kb on - strandat 135.334 kb on - strandat 135.409 kb on + strandat 135.410 kb on - strandat 135.410 kb on - strandat 135.410 kb on - strandat 135.418 kb on + strandat 135.418 kb on + strandat 135.418 kb on + strandat 135.418 kb on + strandat 135.418 kb on + strandat 135.419 kb on - strandat 135.419 kb on - strandat 135.419 kb on - strandat 135.419 kb on - strandat 135.442 kb on + strandat 135.442 kb on + strandat 135.443 kb on - strandat 135.443 kb on - strandat 135.443 kb on - strandat 135.498 kb on - strand, within Sama_0121at 135.590 kb on + strand, within Sama_0121at 135.591 kb on - strand, within Sama_0121at 135.691 kb on + strand, within Sama_0121at 135.691 kb on + strand, within Sama_0121at 135.691 kb on + strand, within Sama_0121at 135.691 kb on + strand, within Sama_0121at 135.691 kb on + strand, within Sama_0121at 135.734 kb on - strand, within Sama_0121at 135.781 kb on + strand, within Sama_0121at 135.781 kb on + strand, within Sama_0121at 135.782 kb on - strand, within Sama_0121at 135.804 kb on - strand, within Sama_0121at 135.804 kb on - strand, within Sama_0121at 135.865 kb on - strand, within Sama_0121at 135.901 kb on + strand, within Sama_0121at 135.978 kb on + strandat 135.978 kb on + strandat 135.978 kb on + strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.979 kb on - strandat 135.980 kb on + strandat 136.045 kb on + strand, within Sama_0122at 136.045 kb on + strand, within Sama_0122at 136.046 kb on - strand, within Sama_0122at 136.097 kb on + strand, within Sama_0122at 136.098 kb on - strand, within Sama_0122at 136.098 kb on - strand, within Sama_0122at 136.171 kb on + strand, within Sama_0122at 136.171 kb on + strand, within Sama_0122at 136.178 kb on + strand, within Sama_0122at 136.392 kb on + strand, within Sama_0122at 136.410 kb on + strand, within Sama_0122at 136.411 kb on - strand, within Sama_0122at 136.411 kb on - strand, within Sama_0122at 136.475 kb on + strand, within Sama_0122at 136.475 kb on + strand, within Sama_0122at 136.475 kb on + strand, within Sama_0122at 136.476 kb on - strand, within Sama_0122at 136.499 kb on + strand, within Sama_0122at 136.500 kb on - strand, within Sama_0122at 136.558 kb on - strand, within Sama_0122at 136.558 kb on - strand, within Sama_0122at 136.601 kb on + strandat 136.601 kb on + strandat 136.602 kb on - strandat 136.602 kb on - strandat 136.602 kb on - strandat 136.602 kb on - strandat 136.666 kb on + strandat 136.666 kb on + strandat 136.666 kb on + strandat 136.667 kb on - strandat 136.667 kb on - strandat 136.667 kb on - strandat 136.707 kb on + strandat 136.707 kb on + strandat 136.707 kb on + strandat 136.707 kb on + strandat 136.707 kb on + strandat 136.707 kb on + strandat 136.708 kb on - strandat 136.708 kb on - strandat 136.708 kb on - strandat 136.708 kb on - strandat 136.708 kb on - strandat 136.710 kb on + strandat 136.710 kb on + strandat 136.710 kb on + strandat 136.710 kb on + strandat 136.710 kb on + strandat 136.710 kb on + strandat 136.711 kb on - strandat 136.744 kb on + strand, within Sama_0123at 136.744 kb on + strand, within Sama_0123at 136.767 kb on + strand, within Sama_0123at 136.768 kb on - strand, within Sama_0123at 136.797 kb on + strand, within Sama_0123at 136.797 kb on + strand, within Sama_0123at 136.797 kb on + strand, within Sama_0123at 136.797 kb on + strand, within Sama_0123at 136.798 kb on - strand, within Sama_0123at 136.798 kb on - strand, within Sama_0123at 136.800 kb on + strand, within Sama_0123at 136.801 kb on - strand, within Sama_0123at 136.801 kb on - strand, within Sama_0123at 136.801 kb on - strand, within Sama_0123at 136.801 kb on - strand, within Sama_0123at 136.811 kb on + strand, within Sama_0123at 136.811 kb on + strand, within Sama_0123at 136.811 kb on + strand, within Sama_0123at 136.811 kb on + strand, within Sama_0123at 136.811 kb on + strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.812 kb on - strand, within Sama_0123at 136.924 kb on + strand, within Sama_0123at 136.924 kb on + strand, within Sama_0123at 136.924 kb on + strand, within Sama_0123at 136.924 kb on + strand, within Sama_0123at 136.924 kb on + strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123at 136.925 kb on - strand, within Sama_0123

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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134,430 - Sama_0120 0.48 -1.2
134,430 - Sama_0120 0.48 +0.4
134,504 + Sama_0120 0.52 +1.2
134,504 + Sama_0120 0.52 -0.5
134,504 + Sama_0120 0.52 +0.2
134,504 + Sama_0120 0.52 -0.2
134,504 + Sama_0120 0.52 -1.4
134,504 + Sama_0120 0.52 +0.7
134,505 - Sama_0120 0.52 +0.9
134,505 - Sama_0120 0.52 -0.1
134,505 - Sama_0120 0.52 -0.3
134,505 - Sama_0120 0.52 -0.5
134,505 - Sama_0120 0.52 -1.0
134,505 - Sama_0120 0.52 -0.6
134,505 - Sama_0120 0.52 +1.2
134,508 + Sama_0120 0.52 -0.3
134,509 - Sama_0120 0.52 -0.2
134,509 - Sama_0120 0.52 +0.2
134,510 - Sama_0120 0.52 +2.6
134,706 + Sama_0120 0.63 +0.4
134,754 - Sama_0120 0.66 +1.2
134,850 - Sama_0120 0.71 +0.1
134,850 - Sama_0120 0.71 +0.8
134,850 - Sama_0120 0.71 +0.4
134,850 - Sama_0120 0.71 -0.4
134,850 - Sama_0120 0.71 -0.4
134,850 - Sama_0120 0.71 -2.2
134,851 + Sama_0120 0.71 +0.2
134,851 + Sama_0120 0.71 +0.2
134,851 + Sama_0120 0.71 +0.6
134,851 + Sama_0120 0.71 +0.6
134,851 + Sama_0120 0.71 +0.8
134,851 + Sama_0120 0.71 +1.1
134,851 + Sama_0120 0.71 -0.7
134,851 + Sama_0120 0.71 +0.1
134,851 + Sama_0120 0.71 -1.1
134,851 + Sama_0120 0.71 +0.0
134,852 - Sama_0120 0.71 -0.5
134,852 - Sama_0120 0.71 +1.1
134,852 - Sama_0120 0.71 -1.3
134,852 - Sama_0120 0.71 +0.4
134,852 - Sama_0120 0.71 -2.0
134,852 - Sama_0120 0.71 +0.8
134,852 - Sama_0120 0.71 -1.7
134,852 - Sama_0120 0.71 -2.0
134,852 - Sama_0120 0.71 -0.9
134,852 - Sama_0120 0.71 -0.3
134,852 - Sama_0120 0.71 +0.2
134,852 - Sama_0120 0.71 +0.8
134,852 - Sama_0120 0.71 +1.1
134,852 - Sama_0120 0.71 +1.2
134,852 - Sama_0120 0.71 +0.4
134,852 - Sama_0120 0.71 -2.4
134,891 + Sama_0120 0.73 +1.0
134,916 + Sama_0120 0.75 -0.1
134,916 + Sama_0120 0.75 -0.8
134,916 + Sama_0120 0.75 +0.3
134,917 - Sama_0120 0.75 +0.6
134,972 + Sama_0120 0.78 +0.1
134,972 + Sama_0120 0.78 +0.6
134,972 + Sama_0120 0.78 -0.5
134,972 + Sama_0120 0.78 -1.2
134,973 - Sama_0120 0.78 +1.0
134,973 - Sama_0120 0.78 +0.0
134,973 - Sama_0120 0.78 +0.5
134,973 - Sama_0120 0.78 -0.2
135,006 + Sama_0120 0.80 -0.7
135,006 + Sama_0120 0.80 +0.2
135,006 + Sama_0120 0.80 -0.7
135,006 + Sama_0120 0.80 -0.9
135,007 - Sama_0120 0.80 -0.7
135,007 - Sama_0120 0.80 -2.4
135,029 + Sama_0120 0.81 +0.9
135,029 + Sama_0120 0.81 -0.3
135,030 - Sama_0120 0.81 +0.6
135,039 + Sama_0120 0.81 -1.4
135,039 + Sama_0120 0.81 +3.9
135,039 + Sama_0120 0.81 -2.5
135,040 - Sama_0120 0.82 +1.9
135,040 - Sama_0120 0.82 -1.1
135,050 + Sama_0120 0.82 +0.4
135,050 + Sama_0120 0.82 +0.0
135,051 - Sama_0120 0.82 +1.1
135,051 - Sama_0120 0.82 -0.7
135,051 - Sama_0120 0.82 +1.0
135,187 + Sama_0120 0.90 -0.2
135,187 + Sama_0120 0.90 +1.1
135,187 + Sama_0120 0.90 +2.1
135,187 + Sama_0120 0.90 +1.1
135,187 + Sama_0120 0.90 -1.1
135,187 + Sama_0120 0.90 +0.3
135,187 + Sama_0120 0.90 +0.5
135,187 + Sama_0120 0.90 +0.5
135,187 + Sama_0120 0.90 -0.6
135,188 - Sama_0120 0.90 -0.8
135,188 - Sama_0120 0.90 +0.6
135,188 - Sama_0120 0.90 +0.5
135,188 - Sama_0120 0.90 +0.3
135,188 - Sama_0120 0.90 +0.6
135,188 - Sama_0120 0.90 +0.6
135,188 - Sama_0120 0.90 -1.0
135,188 - Sama_0120 0.90 -0.2
135,188 - Sama_0120 0.90 -0.2
135,188 - Sama_0120 0.90 -0.8
135,207 - -1.1
135,252 + +1.4
135,316 + -0.6
135,316 + +1.6
135,316 + +0.3
135,317 - -0.6
135,317 - +0.2
135,334 - -1.8
135,409 + -0.5
135,410 - -1.1
135,410 - +0.5
135,410 - -0.3
135,418 + +0.5
135,418 + -0.4
135,418 + -1.0
135,418 + -1.8
135,418 + -1.4
135,419 - -3.2
135,419 - -2.8
135,419 - -0.9
135,419 - +1.8
135,442 + +0.3
135,442 + -0.2
135,443 - +0.7
135,443 - -1.3
135,443 - +0.4
135,498 - Sama_0121 0.19 -1.4
135,590 + Sama_0121 0.34 -0.4
135,591 - Sama_0121 0.34 -0.6
135,691 + Sama_0121 0.51 -1.2
135,691 + Sama_0121 0.51 +1.2
135,691 + Sama_0121 0.51 -0.1
135,691 + Sama_0121 0.51 -2.7
135,691 + Sama_0121 0.51 +0.9
135,734 - Sama_0121 0.59 -0.4
135,781 + Sama_0121 0.66 +0.0
135,781 + Sama_0121 0.66 -1.9
135,782 - Sama_0121 0.67 -0.7
135,804 - Sama_0121 0.70 -0.4
135,804 - Sama_0121 0.70 -0.4
135,865 - Sama_0121 0.81 -3.2
135,901 + Sama_0121 0.87 -1.3
135,978 + -0.2
135,978 + +1.8
135,978 + -1.0
135,979 - +0.1
135,979 - +0.7
135,979 - +0.6
135,979 - +1.2
135,979 - -0.7
135,979 - +1.1
135,979 - +0.4
135,979 - -2.8
135,979 - +0.4
135,979 - +0.7
135,979 - +0.8
135,980 + +0.0
136,045 + Sama_0122 0.12 -1.3
136,045 + Sama_0122 0.12 -1.2
136,046 - Sama_0122 0.12 +0.6
136,097 + Sama_0122 0.19 -0.3
136,098 - Sama_0122 0.20 -0.3
136,098 - Sama_0122 0.20 -3.0
136,171 + Sama_0122 0.30 -1.1
136,171 + Sama_0122 0.30 -0.1
136,178 + Sama_0122 0.31 -2.4
136,392 + Sama_0122 0.62 -2.2
136,410 + Sama_0122 0.65 +0.9
136,411 - Sama_0122 0.65 -1.2
136,411 - Sama_0122 0.65 +1.8
136,475 + Sama_0122 0.74 -1.8
136,475 + Sama_0122 0.74 -1.2
136,475 + Sama_0122 0.74 +0.1
136,476 - Sama_0122 0.74 -2.6
136,499 + Sama_0122 0.77 +1.0
136,500 - Sama_0122 0.78 +0.4
136,558 - Sama_0122 0.86 +1.0
136,558 - Sama_0122 0.86 -2.4
136,601 + +0.6
136,601 + -1.2
136,602 - -1.0
136,602 - -0.8
136,602 - +1.4
136,602 - +0.2
136,666 + -0.4
136,666 + +1.4
136,666 + -1.2
136,667 - +1.6
136,667 - -0.2
136,667 - +0.1
136,707 + -0.9
136,707 + -0.1
136,707 + +0.2
136,707 + -1.0
136,707 + -0.5
136,707 + +1.6
136,708 - +0.3
136,708 - -0.2
136,708 - +1.5
136,708 - -0.2
136,708 - -2.4
136,710 + -2.2
136,710 + -0.2
136,710 + -0.3
136,710 + -0.6
136,710 + -0.7
136,710 + -0.0
136,711 - +0.2
136,744 + Sama_0123 0.13 -0.8
136,744 + Sama_0123 0.13 +1.5
136,767 + Sama_0123 0.16 +0.4
136,768 - Sama_0123 0.16 -0.4
136,797 + Sama_0123 0.20 +0.4
136,797 + Sama_0123 0.20 -0.3
136,797 + Sama_0123 0.20 -2.2
136,797 + Sama_0123 0.20 +0.4
136,798 - Sama_0123 0.20 +0.4
136,798 - Sama_0123 0.20 +0.7
136,800 + Sama_0123 0.21 -1.0
136,801 - Sama_0123 0.21 -0.7
136,801 - Sama_0123 0.21 -0.5
136,801 - Sama_0123 0.21 -1.7
136,801 - Sama_0123 0.21 +0.2
136,811 + Sama_0123 0.22 -0.4
136,811 + Sama_0123 0.22 +0.6
136,811 + Sama_0123 0.22 -0.3
136,811 + Sama_0123 0.22 +0.2
136,811 + Sama_0123 0.22 -0.0
136,812 - Sama_0123 0.22 -1.2
136,812 - Sama_0123 0.22 -1.1
136,812 - Sama_0123 0.22 -0.7
136,812 - Sama_0123 0.22 -0.6
136,812 - Sama_0123 0.22 +0.2
136,812 - Sama_0123 0.22 -0.9
136,924 + Sama_0123 0.38 -1.5
136,924 + Sama_0123 0.38 +0.1
136,924 + Sama_0123 0.38 -2.2
136,924 + Sama_0123 0.38 -0.3
136,924 + Sama_0123 0.38 +0.3
136,925 - Sama_0123 0.38 +0.1
136,925 - Sama_0123 0.38 -0.7
136,925 - Sama_0123 0.38 -0.7
136,925 - Sama_0123 0.38 +0.2
136,925 - Sama_0123 0.38 -0.7
136,925 - Sama_0123 0.38 -0.7

Or see this region's nucleotide sequence