Strain Fitness in Marinobacter adhaerens HP15 around HP15_928

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_926 and HP15_927 overlap by 4 nucleotidesHP15_927 and HP15_928 are separated by 78 nucleotidesHP15_928 and HP15_929 are separated by 45 nucleotidesHP15_929 and HP15_930 are separated by 2 nucleotides HP15_926: HP15_926 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,101 to 940,904 _926 HP15_927: HP15_927 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,901 to 941,623 _927 HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907 _928 HP15_929: HP15_929 - branched-chain amino acid ABC transporter, permease protein, at 942,953 to 943,900 _929 HP15_930: HP15_930 - branched-chain amino acid transport permease, at 943,903 to 944,898 _930 Position (kb) 941 942 943Strain fitness (log2 ratio) -2 -1 0 1 2 3at 940.709 kb on - strand, within HP15_926at 940.753 kb on + strand, within HP15_926at 940.771 kb on - strand, within HP15_926at 940.772 kb on - strand, within HP15_926at 940.986 kb on + strand, within HP15_927at 940.997 kb on + strand, within HP15_927at 941.005 kb on - strand, within HP15_927at 941.005 kb on - strand, within HP15_927at 941.020 kb on - strand, within HP15_927at 941.053 kb on - strand, within HP15_927at 941.097 kb on + strand, within HP15_927at 941.256 kb on + strand, within HP15_927at 941.288 kb on - strand, within HP15_927at 941.313 kb on + strand, within HP15_927at 941.413 kb on + strand, within HP15_927at 941.441 kb on - strand, within HP15_927at 941.479 kb on + strand, within HP15_927at 941.505 kb on + strand, within HP15_927at 941.537 kb on + strand, within HP15_927at 941.545 kb on - strand, within HP15_927at 941.583 kb on + strandat 941.583 kb on + strandat 941.659 kb on + strandat 941.809 kb on + strandat 941.924 kb on - strand, within HP15_928at 941.970 kb on - strand, within HP15_928at 942.083 kb on + strand, within HP15_928at 942.194 kb on + strand, within HP15_928at 942.264 kb on + strand, within HP15_928at 942.268 kb on - strand, within HP15_928at 942.311 kb on + strand, within HP15_928at 942.311 kb on + strand, within HP15_928at 942.354 kb on + strand, within HP15_928at 942.389 kb on + strand, within HP15_928at 942.395 kb on + strand, within HP15_928at 942.426 kb on + strand, within HP15_928at 942.474 kb on - strand, within HP15_928at 942.511 kb on - strand, within HP15_928at 942.511 kb on - strand, within HP15_928at 942.572 kb on - strand, within HP15_928at 942.617 kb on + strand, within HP15_928at 942.706 kb on - strand, within HP15_928at 942.706 kb on - strand, within HP15_928at 942.733 kb on + strand, within HP15_928at 942.779 kb on - strand, within HP15_928at 942.805 kb on + strandat 942.813 kb on - strandat 942.813 kb on - strandat 942.824 kb on - strandat 942.859 kb on + strandat 942.867 kb on - strandat 942.885 kb on + strandat 942.946 kb on - strandat 943.043 kb on + strandat 943.094 kb on + strand, within HP15_929at 943.094 kb on + strand, within HP15_929at 943.094 kb on + strand, within HP15_929at 943.094 kb on + strand, within HP15_929at 943.102 kb on - strand, within HP15_929at 943.183 kb on - strand, within HP15_929at 943.253 kb on + strand, within HP15_929at 943.309 kb on - strand, within HP15_929at 943.309 kb on - strand, within HP15_929at 943.351 kb on - strand, within HP15_929at 943.389 kb on + strand, within HP15_929at 943.401 kb on - strand, within HP15_929at 943.406 kb on - strand, within HP15_929at 943.414 kb on + strand, within HP15_929at 943.414 kb on + strand, within HP15_929at 943.414 kb on + strand, within HP15_929at 943.422 kb on - strand, within HP15_929at 943.430 kb on + strand, within HP15_929at 943.463 kb on + strand, within HP15_929at 943.470 kb on - strand, within HP15_929at 943.674 kb on - strand, within HP15_929at 943.713 kb on - strand, within HP15_929at 943.744 kb on - strand, within HP15_929at 943.772 kb on + strand, within HP15_929at 943.806 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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940,709 - HP15_926 0.76 -0.8
940,753 + HP15_926 0.81 -0.4
940,771 - HP15_926 0.83 -1.5
940,772 - HP15_926 0.83 +0.3
940,986 + HP15_927 0.12 +0.4
940,997 + HP15_927 0.13 +2.1
941,005 - HP15_927 0.14 +0.7
941,005 - HP15_927 0.14 +0.6
941,020 - HP15_927 0.16 +0.3
941,053 - HP15_927 0.21 +0.3
941,097 + HP15_927 0.27 +3.2
941,256 + HP15_927 0.49 +0.0
941,288 - HP15_927 0.54 +0.4
941,313 + HP15_927 0.57 +0.4
941,413 + HP15_927 0.71 -0.0
941,441 - HP15_927 0.75 +0.1
941,479 + HP15_927 0.80 +0.2
941,505 + HP15_927 0.84 +0.2
941,537 + HP15_927 0.88 -0.4
941,545 - HP15_927 0.89 -0.6
941,583 + +0.4
941,583 + +0.7
941,659 + -0.0
941,809 + +0.4
941,924 - HP15_928 0.18 -0.6
941,970 - HP15_928 0.22 +0.5
942,083 + HP15_928 0.32 +1.0
942,194 + HP15_928 0.41 -1.6
942,264 + HP15_928 0.47 +0.5
942,268 - HP15_928 0.47 -0.2
942,311 + HP15_928 0.50 -0.3
942,311 + HP15_928 0.50 -1.0
942,354 + HP15_928 0.54 -0.1
942,389 + HP15_928 0.57 -0.4
942,395 + HP15_928 0.57 +1.9
942,426 + HP15_928 0.60 +2.1
942,474 - HP15_928 0.64 +0.9
942,511 - HP15_928 0.67 +1.5
942,511 - HP15_928 0.67 +1.1
942,572 - HP15_928 0.72 -0.4
942,617 + HP15_928 0.76 -0.2
942,706 - HP15_928 0.83 +1.5
942,706 - HP15_928 0.83 +0.3
942,733 + HP15_928 0.85 +0.2
942,779 - HP15_928 0.89 +0.4
942,805 + -1.5
942,813 - +0.1
942,813 - +0.3
942,824 - -0.4
942,859 + +0.5
942,867 - -1.0
942,885 + +0.8
942,946 - -0.7
943,043 + +0.1
943,094 + HP15_929 0.15 +0.5
943,094 + HP15_929 0.15 -0.3
943,094 + HP15_929 0.15 -0.2
943,094 + HP15_929 0.15 -1.2
943,102 - HP15_929 0.16 +0.5
943,183 - HP15_929 0.24 -0.2
943,253 + HP15_929 0.32 -0.6
943,309 - HP15_929 0.38 -0.7
943,309 - HP15_929 0.38 +0.2
943,351 - HP15_929 0.42 -0.3
943,389 + HP15_929 0.46 +0.3
943,401 - HP15_929 0.47 -0.9
943,406 - HP15_929 0.48 +0.6
943,414 + HP15_929 0.49 -0.1
943,414 + HP15_929 0.49 +1.3
943,414 + HP15_929 0.49 -0.8
943,422 - HP15_929 0.49 -1.9
943,430 + HP15_929 0.50 -0.8
943,463 + HP15_929 0.54 -2.6
943,470 - HP15_929 0.55 +0.5
943,674 - HP15_929 0.76 -1.5
943,713 - HP15_929 0.80 -0.2
943,744 - HP15_929 0.83 -0.1
943,772 + HP15_929 0.86 +1.5
943,806 + +0.4

Or see this region's nucleotide sequence