Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_873 and HP15_874 are separated by 50 nucleotides HP15_874 and HP15_875 are separated by 86 nucleotides HP15_875 and HP15_876 are separated by 27 nucleotides HP15_876 and HP15_877 overlap by 4 nucleotides
HP15_873: HP15_873 - conserved hypothetical protein, at 892,183 to 892,563
_873
HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183
_874
HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983
_875
HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424
_876
HP15_877: HP15_877 - lipase/esterase, at 894,421 to 895,491
_877
Position (kb) 893
894 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 892.282 kb on + strand, within HP15_873 at 892.341 kb on - strand, within HP15_873 at 892.416 kb on + strand, within HP15_873 at 892.531 kb on - strand at 892.531 kb on - strand at 892.580 kb on - strand at 892.580 kb on - strand at 892.706 kb on + strand, within HP15_874 at 892.788 kb on + strand, within HP15_874 at 892.902 kb on + strand, within HP15_874 at 892.910 kb on - strand, within HP15_874 at 893.018 kb on - strand, within HP15_874 at 893.110 kb on + strand, within HP15_874 at 893.261 kb on + strand at 893.267 kb on + strand at 893.275 kb on - strand at 893.337 kb on + strand at 893.416 kb on + strand, within HP15_875 at 893.424 kb on - strand, within HP15_875 at 893.465 kb on + strand, within HP15_875 at 893.471 kb on - strand, within HP15_875 at 893.540 kb on - strand, within HP15_875 at 893.662 kb on + strand, within HP15_875 at 893.712 kb on - strand, within HP15_875 at 893.901 kb on - strand, within HP15_875 at 893.944 kb on - strand at 893.978 kb on + strand at 893.995 kb on + strand at 894.010 kb on - strand at 894.030 kb on + strand at 894.062 kb on + strand, within HP15_876 at 894.073 kb on + strand, within HP15_876 at 894.098 kb on - strand, within HP15_876 at 894.406 kb on + strand at 894.413 kb on + strand at 894.414 kb on - strand at 894.418 kb on + strand at 894.433 kb on - strand at 894.459 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.470 kb on + strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.478 kb on - strand at 894.487 kb on + strand at 894.601 kb on - strand, within HP15_877 at 894.618 kb on - strand, within HP15_877 at 894.647 kb on + strand, within HP15_877 at 894.647 kb on - strand, within HP15_877 at 894.647 kb on - strand, within HP15_877 at 894.666 kb on + strand, within HP15_877 at 894.733 kb on + strand, within HP15_877 at 894.760 kb on - strand, within HP15_877 at 894.774 kb on - strand, within HP15_877 at 894.784 kb on - strand, within HP15_877 at 894.842 kb on - strand, within HP15_877 at 894.980 kb on - strand, within HP15_877
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 892,282 + HP15_873 0.26 -0.1 892,341 - HP15_873 0.41 +0.5 892,416 + HP15_873 0.61 +3.2 892,531 - +0.1 892,531 - -0.1 892,580 - -0.1 892,580 - +1.7 892,706 + HP15_874 0.16 +0.1 892,788 + HP15_874 0.31 -0.6 892,902 + HP15_874 0.51 -0.5 892,910 - HP15_874 0.52 -0.1 893,018 - HP15_874 0.71 +0.3 893,110 + HP15_874 0.87 -0.6 893,261 + +1.1 893,267 + +0.7 893,275 - -0.3 893,337 + -0.5 893,416 + HP15_875 0.20 -0.3 893,424 - HP15_875 0.22 -0.5 893,465 + HP15_875 0.27 -0.6 893,471 - HP15_875 0.28 -0.8 893,540 - HP15_875 0.38 -1.5 893,662 + HP15_875 0.55 +0.5 893,712 - HP15_875 0.62 +0.2 893,901 - HP15_875 0.88 -0.7 893,944 - -0.5 893,978 + -1.1 893,995 + -0.1 894,010 - +0.7 894,030 + -0.6 894,062 + HP15_876 0.12 +1.5 894,073 + HP15_876 0.15 -0.7 894,098 - HP15_876 0.21 -1.2 894,406 + -0.7 894,413 + +0.9 894,414 - -1.3 894,418 + +1.2 894,433 - -1.0 894,459 + -0.1 894,470 + +2.9 894,470 + +0.9 894,470 + -0.6 894,470 + -0.1 894,478 - -0.0 894,478 - +0.3 894,478 - +0.0 894,478 - +1.3 894,487 + -0.8 894,601 - HP15_877 0.17 +1.3 894,618 - HP15_877 0.18 -1.4 894,647 + HP15_877 0.21 -0.3 894,647 - HP15_877 0.21 +1.3 894,647 - HP15_877 0.21 -0.6 894,666 + HP15_877 0.23 -1.8 894,733 + HP15_877 0.29 -0.8 894,760 - HP15_877 0.32 +0.0 894,774 - HP15_877 0.33 +0.1 894,784 - HP15_877 0.34 +1.9 894,842 - HP15_877 0.39 -0.1 894,980 - HP15_877 0.52 +1.5
Or see this region's nucleotide sequence