Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_835 and HP15_836 are separated by 251 nucleotides HP15_836 and HP15_837 overlap by 14 nucleotides
HP15_835: HP15_835 - secreted protein containing glucose sorbosone dehydrogenase domain, at 852,915 to 854,036
_835
HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109
_836
HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066
_837
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.323 kb on - strand, within HP15_835 at 853.336 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.537 kb on - strand, within HP15_835 at 853.605 kb on + strand, within HP15_835 at 853.640 kb on + strand, within HP15_835 at 853.658 kb on - strand, within HP15_835 at 853.685 kb on - strand, within HP15_835 at 853.798 kb on - strand, within HP15_835 at 853.919 kb on + strand, within HP15_835 at 854.019 kb on + strand at 854.020 kb on - strand at 854.131 kb on - strand at 854.142 kb on + strand at 854.276 kb on + strand at 854.326 kb on + strand at 854.439 kb on + strand, within HP15_836 at 854.467 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.573 kb on - strand, within HP15_836 at 854.590 kb on + strand, within HP15_836 at 854.608 kb on - strand, within HP15_836 at 854.644 kb on - strand, within HP15_836 at 854.646 kb on + strand, within HP15_836 at 854.894 kb on - strand, within HP15_836 at 855.027 kb on - strand at 855.029 kb on + strand at 855.029 kb on + strand at 855.081 kb on + strand at 855.095 kb on - strand at 855.126 kb on + strand at 855.144 kb on + strand at 855.408 kb on - strand, within HP15_837 at 855.450 kb on - strand, within HP15_837 at 855.472 kb on - strand, within HP15_837 at 855.512 kb on - strand, within HP15_837 at 855.594 kb on - strand, within HP15_837 at 855.769 kb on + strand, within HP15_837 at 855.822 kb on + strand, within HP15_837 at 855.831 kb on - strand, within HP15_837 at 855.848 kb on + strand, within HP15_837 at 855.867 kb on + strand, within HP15_837 at 855.872 kb on + strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.875 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.880 kb on - strand, within HP15_837 at 855.966 kb on - strand, within HP15_837 at 855.990 kb on - strand, within HP15_837 at 856.023 kb on + strand, within HP15_837 at 856.031 kb on - strand, within HP15_837 at 856.093 kb on - strand, within HP15_837
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 853,323 - HP15_835 0.36 -0.1 853,336 - HP15_835 0.38 -0.6 853,503 - HP15_835 0.52 -0.3 853,503 - HP15_835 0.52 +1.0 853,537 - HP15_835 0.55 -0.5 853,605 + HP15_835 0.61 -0.6 853,640 + HP15_835 0.65 -1.4 853,658 - HP15_835 0.66 -0.4 853,685 - HP15_835 0.69 +0.3 853,798 - HP15_835 0.79 +2.6 853,919 + HP15_835 0.89 +0.4 854,019 + -0.1 854,020 - +0.0 854,131 - -0.4 854,142 + -0.9 854,276 + -1.2 854,326 + +0.9 854,439 + HP15_836 0.18 +0.6 854,467 - HP15_836 0.22 -0.6 854,524 - HP15_836 0.29 -0.6 854,524 - HP15_836 0.29 -0.2 854,573 - HP15_836 0.35 +1.3 854,590 + HP15_836 0.37 +0.0 854,608 - HP15_836 0.39 -1.3 854,644 - HP15_836 0.43 -1.0 854,646 + HP15_836 0.44 +0.2 854,894 - HP15_836 0.74 -1.0 855,027 - -0.1 855,029 + -0.5 855,029 + +0.3 855,081 + +0.2 855,095 - -0.4 855,126 + -0.7 855,144 + -1.7 855,408 - HP15_837 0.16 +0.8 855,450 - HP15_837 0.18 -0.8 855,472 - HP15_837 0.19 +0.3 855,512 - HP15_837 0.21 +0.2 855,594 - HP15_837 0.25 +0.3 855,769 + HP15_837 0.34 -0.6 855,822 + HP15_837 0.37 -0.2 855,831 - HP15_837 0.37 -1.9 855,848 + HP15_837 0.38 +0.2 855,867 + HP15_837 0.39 -0.3 855,872 + HP15_837 0.39 +0.6 855,875 - HP15_837 0.40 +0.5 855,875 - HP15_837 0.40 +0.5 855,875 - HP15_837 0.40 +0.0 855,875 - HP15_837 0.40 -0.3 855,880 - HP15_837 0.40 +1.7 855,880 - HP15_837 0.40 -0.1 855,966 - HP15_837 0.44 -0.2 855,990 - HP15_837 0.45 -1.0 856,023 + HP15_837 0.47 +1.2 856,031 - HP15_837 0.47 +2.0 856,093 - HP15_837 0.51 +0.4
Or see this region's nucleotide sequence