Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07960 and PGA1_c07970 are separated by 58 nucleotides PGA1_c07970 and PGA1_c07980 are separated by 46 nucleotides PGA1_c07980 and PGA1_c07990 overlap by 1 nucleotides
PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196
_c07960
PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187
_c07970
PGA1_c07980: PGA1_c07980 - metallo beta-lactamase domain-containing protein, at 828,234 to 829,031
_c07980
PGA1_c07990: PGA1_c07990 - putative hydrolase, TatD family, at 829,031 to 829,852
_c07990
Position (kb) 827
828
829 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 826.309 kb on - strand, within PGA1_c07960 at 826.309 kb on - strand, within PGA1_c07960 at 826.334 kb on - strand, within PGA1_c07960 at 826.407 kb on + strand, within PGA1_c07960 at 826.520 kb on + strand, within PGA1_c07960 at 826.525 kb on + strand, within PGA1_c07960 at 826.538 kb on - strand, within PGA1_c07960 at 826.886 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.963 kb on + strand, within PGA1_c07960 at 826.971 kb on - strand, within PGA1_c07960 at 826.978 kb on + strand, within PGA1_c07960 at 826.992 kb on - strand, within PGA1_c07960 at 827.006 kb on + strand, within PGA1_c07960 at 827.112 kb on - strand at 827.222 kb on - strand at 827.280 kb on - strand at 827.280 kb on - strand at 827.284 kb on - strand at 827.290 kb on + strand at 827.326 kb on + strand at 827.363 kb on + strand, within PGA1_c07970 at 827.399 kb on + strand, within PGA1_c07970 at 827.409 kb on + strand, within PGA1_c07970 at 827.409 kb on - strand, within PGA1_c07970 at 827.412 kb on - strand, within PGA1_c07970 at 827.431 kb on + strand, within PGA1_c07970 at 827.459 kb on - strand, within PGA1_c07970 at 827.549 kb on - strand, within PGA1_c07970 at 827.621 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.628 kb on + strand, within PGA1_c07970 at 827.634 kb on - strand, within PGA1_c07970 at 827.636 kb on + strand, within PGA1_c07970 at 827.636 kb on - strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.648 kb on + strand, within PGA1_c07970 at 827.666 kb on + strand, within PGA1_c07970 at 827.684 kb on - strand, within PGA1_c07970 at 827.744 kb on + strand, within PGA1_c07970 at 827.947 kb on - strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.950 kb on + strand, within PGA1_c07970 at 827.958 kb on - strand, within PGA1_c07970 at 827.983 kb on - strand, within PGA1_c07970 at 827.998 kb on + strand, within PGA1_c07970 at 828.006 kb on - strand, within PGA1_c07970 at 828.119 kb on + strand at 828.281 kb on + strand at 828.281 kb on + strand at 828.296 kb on - strand at 828.348 kb on + strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.356 kb on - strand, within PGA1_c07980 at 828.417 kb on + strand, within PGA1_c07980 at 828.529 kb on - strand, within PGA1_c07980 at 828.530 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.620 kb on + strand, within PGA1_c07980 at 828.628 kb on - strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.635 kb on + strand, within PGA1_c07980 at 828.654 kb on - strand, within PGA1_c07980 at 828.763 kb on + strand, within PGA1_c07980 at 828.793 kb on + strand, within PGA1_c07980 at 828.800 kb on - strand, within PGA1_c07980 at 828.884 kb on + strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.892 kb on - strand, within PGA1_c07980 at 828.938 kb on - strand, within PGA1_c07980 at 828.991 kb on - strand at 828.994 kb on - strand at 829.035 kb on - strand at 829.134 kb on - strand, within PGA1_c07990 at 829.150 kb on - strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.155 kb on + strand, within PGA1_c07990 at 829.163 kb on - strand, within PGA1_c07990
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 826,309 - PGA1_c07960 0.42 -0.7 826,309 - PGA1_c07960 0.42 -1.4 826,334 - PGA1_c07960 0.43 -1.1 826,407 + PGA1_c07960 0.48 -2.4 826,520 + PGA1_c07960 0.55 -0.3 826,525 + PGA1_c07960 0.56 -0.8 826,538 - PGA1_c07960 0.57 +0.2 826,886 + PGA1_c07960 0.80 +0.7 826,963 + PGA1_c07960 0.85 +0.6 826,963 + PGA1_c07960 0.85 +0.8 826,963 + PGA1_c07960 0.85 +1.7 826,971 - PGA1_c07960 0.85 +0.7 826,978 + PGA1_c07960 0.86 +0.6 826,992 - PGA1_c07960 0.86 -0.4 827,006 + PGA1_c07960 0.87 +0.9 827,112 - +0.0 827,222 - -0.4 827,280 - -0.1 827,280 - -1.3 827,284 - -0.8 827,290 + -2.6 827,326 + -0.3 827,363 + PGA1_c07970 0.12 -0.3 827,399 + PGA1_c07970 0.15 -1.2 827,409 + PGA1_c07970 0.17 -0.0 827,409 - PGA1_c07970 0.17 -1.7 827,412 - PGA1_c07970 0.17 +0.4 827,431 + PGA1_c07970 0.19 -1.6 827,459 - PGA1_c07970 0.22 -1.7 827,549 - PGA1_c07970 0.32 +1.2 827,621 + PGA1_c07970 0.39 -0.7 827,628 + PGA1_c07970 0.40 -2.4 827,628 + PGA1_c07970 0.40 -2.0 827,634 - PGA1_c07970 0.41 +0.2 827,636 + PGA1_c07970 0.41 -0.1 827,636 - PGA1_c07970 0.41 +3.3 827,648 + PGA1_c07970 0.42 +0.2 827,648 + PGA1_c07970 0.42 +0.6 827,648 + PGA1_c07970 0.42 -0.3 827,666 + PGA1_c07970 0.44 -0.1 827,684 - PGA1_c07970 0.46 -2.2 827,744 + PGA1_c07970 0.52 +1.4 827,947 - PGA1_c07970 0.74 -1.8 827,950 + PGA1_c07970 0.74 -0.8 827,950 + PGA1_c07970 0.74 -0.4 827,958 - PGA1_c07970 0.75 -2.0 827,983 - PGA1_c07970 0.78 -1.3 827,998 + PGA1_c07970 0.80 +0.4 828,006 - PGA1_c07970 0.80 -1.7 828,119 + -2.5 828,281 + -1.2 828,281 + -0.5 828,296 - +0.7 828,348 + PGA1_c07980 0.14 -0.2 828,356 - PGA1_c07980 0.15 +0.2 828,356 - PGA1_c07980 0.15 -0.5 828,417 + PGA1_c07980 0.23 +0.4 828,529 - PGA1_c07980 0.37 -0.3 828,530 + PGA1_c07980 0.37 -1.2 828,620 + PGA1_c07980 0.48 -0.7 828,620 + PGA1_c07980 0.48 +0.2 828,628 - PGA1_c07980 0.49 +0.2 828,635 + PGA1_c07980 0.50 -0.3 828,635 + PGA1_c07980 0.50 +0.2 828,654 - PGA1_c07980 0.53 -0.4 828,763 + PGA1_c07980 0.66 +0.8 828,793 + PGA1_c07980 0.70 +1.2 828,800 - PGA1_c07980 0.71 +1.3 828,884 + PGA1_c07980 0.81 -1.4 828,892 - PGA1_c07980 0.82 -0.4 828,892 - PGA1_c07980 0.82 -0.5 828,892 - PGA1_c07980 0.82 -1.8 828,892 - PGA1_c07980 0.82 -0.8 828,938 - PGA1_c07980 0.88 -2.4 828,991 - -0.7 828,994 - -0.5 829,035 - -0.1 829,134 - PGA1_c07990 0.13 -0.4 829,150 - PGA1_c07990 0.14 -0.3 829,155 + PGA1_c07990 0.15 -1.8 829,155 + PGA1_c07990 0.15 +1.2 829,163 - PGA1_c07990 0.16 -1.2
Or see this region's nucleotide sequence