Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07330 and PGA1_c07340 are separated by 8 nucleotides PGA1_c07340 and PGA1_c07350 overlap by 11 nucleotides PGA1_c07350 and PGA1_c07360 overlap by 4 nucleotides PGA1_c07360 and PGA1_c07370 overlap by 4 nucleotides
PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652
_c07330
PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533
_c07340
PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134
_c07350
PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108
_c07360
PGA1_c07370: PGA1_c07370 - putative short chain dehydrogenase, at 759,105 to 759,875
_c07370
Position (kb) 757
758
759 Strain fitness (log2 ratio) -2
-1
0
1
2 at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.599 kb on + strand at 756.624 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.647 kb on - strand at 756.657 kb on - strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.735 kb on + strand at 756.823 kb on - strand, within PGA1_c07340 at 756.861 kb on - strand, within PGA1_c07340 at 756.888 kb on - strand, within PGA1_c07340 at 757.033 kb on - strand, within PGA1_c07340 at 757.222 kb on + strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.231 kb on - strand, within PGA1_c07340 at 757.258 kb on + strand, within PGA1_c07340 at 757.307 kb on + strand, within PGA1_c07340 at 757.315 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.346 kb on + strand, within PGA1_c07340 at 757.381 kb on + strand, within PGA1_c07340 at 757.424 kb on - strand, within PGA1_c07340 at 757.495 kb on - strand at 757.591 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.689 kb on + strand, within PGA1_c07350 at 757.798 kb on + strand, within PGA1_c07350 at 757.868 kb on - strand, within PGA1_c07350 at 757.940 kb on + strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.959 kb on - strand, within PGA1_c07350 at 758.044 kb on + strand, within PGA1_c07350 at 758.110 kb on + strand at 758.110 kb on + strand at 758.176 kb on - strand at 758.192 kb on - strand at 758.206 kb on + strand at 758.211 kb on + strand at 758.259 kb on + strand, within PGA1_c07360 at 758.259 kb on + strand, within PGA1_c07360 at 758.263 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.360 kb on - strand, within PGA1_c07360 at 758.409 kb on + strand, within PGA1_c07360 at 758.427 kb on - strand, within PGA1_c07360 at 758.591 kb on + strand, within PGA1_c07360 at 758.635 kb on - strand, within PGA1_c07360 at 758.649 kb on + strand, within PGA1_c07360 at 758.735 kb on - strand, within PGA1_c07360 at 758.814 kb on + strand, within PGA1_c07360 at 758.819 kb on + strand, within PGA1_c07360 at 758.822 kb on - strand, within PGA1_c07360 at 758.827 kb on - strand, within PGA1_c07360 at 758.892 kb on - strand, within PGA1_c07360 at 758.938 kb on - strand, within PGA1_c07360 at 758.964 kb on + strand, within PGA1_c07360 at 758.969 kb on + strand, within PGA1_c07360 at 759.011 kb on - strand at 759.057 kb on + strand at 759.057 kb on + strand at 759.064 kb on - strand at 759.116 kb on + strand at 759.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 756,557 + -0.5 756,557 + -0.4 756,557 + -0.9 756,599 + -0.6 756,624 - +0.7 756,640 - -0.8 756,640 - -1.0 756,640 - +0.5 756,647 - +1.7 756,657 - +1.4 756,715 + +0.4 756,715 + +0.1 756,715 + +0.2 756,735 + -0.8 756,823 - PGA1_c07340 0.19 -0.9 756,861 - PGA1_c07340 0.23 +1.1 756,888 - PGA1_c07340 0.26 -0.6 757,033 - PGA1_c07340 0.43 -1.2 757,222 + PGA1_c07340 0.64 -1.3 757,230 - PGA1_c07340 0.65 -0.6 757,230 - PGA1_c07340 0.65 +0.3 757,231 - PGA1_c07340 0.65 -0.7 757,258 + PGA1_c07340 0.68 +0.1 757,307 + PGA1_c07340 0.74 -0.4 757,315 - PGA1_c07340 0.75 -0.5 757,320 - PGA1_c07340 0.75 +1.0 757,320 - PGA1_c07340 0.75 -0.6 757,320 - PGA1_c07340 0.75 +0.1 757,346 + PGA1_c07340 0.78 -1.3 757,381 + PGA1_c07340 0.82 -1.4 757,424 - PGA1_c07340 0.87 -0.4 757,495 - +0.8 757,591 - PGA1_c07350 0.11 -0.5 757,610 - PGA1_c07350 0.14 +0.7 757,610 - PGA1_c07350 0.14 +1.1 757,689 + PGA1_c07350 0.27 +2.0 757,798 + PGA1_c07350 0.45 -0.3 757,868 - PGA1_c07350 0.56 +2.0 757,940 + PGA1_c07350 0.68 -1.8 757,946 - PGA1_c07350 0.69 -0.2 757,946 - PGA1_c07350 0.69 +1.1 757,959 - PGA1_c07350 0.71 +0.2 758,044 + PGA1_c07350 0.85 +0.0 758,110 + -0.5 758,110 + +0.3 758,176 - -0.2 758,192 - +0.1 758,206 + -0.2 758,211 + +0.7 758,259 + PGA1_c07360 0.13 +0.1 758,259 + PGA1_c07360 0.13 -0.2 758,263 + PGA1_c07360 0.13 +1.1 758,354 + PGA1_c07360 0.23 +0.4 758,354 + PGA1_c07360 0.23 +0.0 758,360 - PGA1_c07360 0.23 +0.6 758,409 + PGA1_c07360 0.28 +0.9 758,427 - PGA1_c07360 0.30 +0.7 758,591 + PGA1_c07360 0.47 +0.1 758,635 - PGA1_c07360 0.52 +1.9 758,649 + PGA1_c07360 0.53 -1.7 758,735 - PGA1_c07360 0.62 -0.5 758,814 + PGA1_c07360 0.70 +0.9 758,819 + PGA1_c07360 0.70 -1.7 758,822 - PGA1_c07360 0.71 -0.9 758,827 - PGA1_c07360 0.71 -0.3 758,892 - PGA1_c07360 0.78 +0.2 758,938 - PGA1_c07360 0.83 +0.7 758,964 + PGA1_c07360 0.85 +0.1 758,969 + PGA1_c07360 0.86 +0.6 759,011 - -1.7 759,057 + +0.0 759,057 + -0.6 759,064 - +0.2 759,116 + +0.4 759,122 - +0.5
Or see this region's nucleotide sequence