Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07140

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07120 and PGA1_c07130 are separated by 147 nucleotidesPGA1_c07130 and PGA1_c07140 are separated by 4 nucleotidesPGA1_c07140 and PGA1_c07150 overlap by 4 nucleotidesPGA1_c07150 and PGA1_c07160 are separated by 19 nucleotides PGA1_c07120: PGA1_c07120 - putative universal stress protein, at 732,680 to 733,114 _c07120 PGA1_c07130: PGA1_c07130 - putative leucine-responsive regulatory protein, at 733,262 to 733,717 _c07130 PGA1_c07140: PGA1_c07140 - putative methylamine utilization protein MauG, at 733,722 to 734,975 _c07140 PGA1_c07150: PGA1_c07150 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 734,972 to 735,772 _c07150 PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102 _c07160 Position (kb) 733 734 735Strain fitness (log2 ratio) -2 -1 0 1 2 3at 732.818 kb on + strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.826 kb on - strand, within PGA1_c07120at 732.828 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.870 kb on - strand, within PGA1_c07120at 732.897 kb on + strand, within PGA1_c07120at 733.034 kb on - strand, within PGA1_c07120at 733.046 kb on - strand, within PGA1_c07120at 733.121 kb on + strandat 733.123 kb on + strandat 733.128 kb on + strandat 733.131 kb on - strandat 733.356 kb on - strand, within PGA1_c07130at 733.356 kb on - strand, within PGA1_c07130at 733.371 kb on - strand, within PGA1_c07130at 733.435 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.440 kb on + strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.448 kb on - strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.527 kb on + strand, within PGA1_c07130at 733.535 kb on - strand, within PGA1_c07130at 733.543 kb on - strand, within PGA1_c07130at 733.596 kb on + strand, within PGA1_c07130at 733.604 kb on - strand, within PGA1_c07130at 733.639 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.657 kb on + strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.665 kb on - strand, within PGA1_c07130at 733.669 kb on + strand, within PGA1_c07130at 733.759 kb on + strandat 733.765 kb on + strandat 733.775 kb on - strandat 733.775 kb on - strandat 733.798 kb on + strandat 733.819 kb on - strandat 733.819 kb on - strandat 733.825 kb on - strandat 733.842 kb on - strandat 733.842 kb on - strandat 733.846 kb on - strandat 733.848 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.853 kb on + strand, within PGA1_c07140at 733.861 kb on - strand, within PGA1_c07140at 733.904 kb on + strand, within PGA1_c07140at 733.934 kb on + strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.942 kb on - strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.949 kb on + strand, within PGA1_c07140at 733.965 kb on - strand, within PGA1_c07140at 733.994 kb on + strand, within PGA1_c07140at 734.002 kb on - strand, within PGA1_c07140at 734.023 kb on + strand, within PGA1_c07140at 734.127 kb on + strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.135 kb on - strand, within PGA1_c07140at 734.169 kb on - strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.183 kb on + strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.191 kb on - strand, within PGA1_c07140at 734.206 kb on + strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.207 kb on - strand, within PGA1_c07140at 734.210 kb on - strand, within PGA1_c07140at 734.214 kb on - strand, within PGA1_c07140at 734.228 kb on + strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.236 kb on - strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.394 kb on + strand, within PGA1_c07140at 734.408 kb on - strand, within PGA1_c07140at 734.443 kb on + strand, within PGA1_c07140at 734.512 kb on + strand, within PGA1_c07140at 734.534 kb on + strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.542 kb on - strand, within PGA1_c07140at 734.552 kb on - strand, within PGA1_c07140at 734.554 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.579 kb on + strand, within PGA1_c07140at 734.587 kb on - strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.619 kb on + strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.627 kb on - strand, within PGA1_c07140at 734.644 kb on + strand, within PGA1_c07140at 734.650 kb on + strand, within PGA1_c07140at 734.652 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140at 734.657 kb on - strand, within PGA1_c07140at 734.742 kb on + strand, within PGA1_c07140at 734.745 kb on - strand, within PGA1_c07140at 734.778 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.802 kb on + strand, within PGA1_c07140at 734.810 kb on - strand, within PGA1_c07140at 734.810 kb on - strand, within PGA1_c07140at 734.824 kb on - strand, within PGA1_c07140at 734.860 kb on + strandat 734.865 kb on + strandat 734.878 kb on - strandat 734.937 kb on - strandat 734.966 kb on - strandat 735.037 kb on + strandat 735.041 kb on - strandat 735.045 kb on - strandat 735.068 kb on + strand, within PGA1_c07150at 735.080 kb on - strand, within PGA1_c07150at 735.089 kb on - strand, within PGA1_c07150at 735.128 kb on + strand, within PGA1_c07150at 735.129 kb on + strand, within PGA1_c07150at 735.130 kb on - strand, within PGA1_c07150at 735.136 kb on - strand, within PGA1_c07150at 735.139 kb on + strand, within PGA1_c07150at 735.139 kb on + strand, within PGA1_c07150at 735.142 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.147 kb on - strand, within PGA1_c07150at 735.185 kb on + strand, within PGA1_c07150at 735.185 kb on + strand, within PGA1_c07150at 735.190 kb on + strand, within PGA1_c07150at 735.238 kb on - strand, within PGA1_c07150at 735.257 kb on + strand, within PGA1_c07150at 735.265 kb on - strand, within PGA1_c07150at 735.321 kb on + strand, within PGA1_c07150at 735.328 kb on + strand, within PGA1_c07150at 735.328 kb on + strand, within PGA1_c07150at 735.376 kb on - strand, within PGA1_c07150at 735.380 kb on + strand, within PGA1_c07150at 735.406 kb on - strand, within PGA1_c07150at 735.498 kb on + strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.517 kb on - strand, within PGA1_c07150at 735.545 kb on - strand, within PGA1_c07150at 735.580 kb on - strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.587 kb on + strand, within PGA1_c07150at 735.644 kb on + strand, within PGA1_c07150at 735.655 kb on + strand, within PGA1_c07150at 735.657 kb on + strand, within PGA1_c07150at 735.745 kb on - strandat 735.745 kb on - strandat 735.804 kb on - strandat 735.825 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.840 kb on + strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.848 kb on - strandat 735.853 kb on - strandat 735.879 kb on + strandat 735.884 kb on + strandat 735.884 kb on + strandat 735.900 kb on + strandat 735.907 kb on + strandat 735.907 kb on + strandat 735.908 kb on - strandat 735.910 kb on + strandat 735.910 kb on + strandat 735.931 kb on - strand, within PGA1_c07160at 735.961 kb on + strand, within PGA1_c07160

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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732,818 + PGA1_c07120 0.32 +1.2
732,826 - PGA1_c07120 0.34 +0.0
732,826 - PGA1_c07120 0.34 -0.1
732,828 - PGA1_c07120 0.34 +0.5
732,870 - PGA1_c07120 0.44 -0.1
732,870 - PGA1_c07120 0.44 -0.2
732,897 + PGA1_c07120 0.50 +0.5
733,034 - PGA1_c07120 0.81 -0.5
733,046 - PGA1_c07120 0.84 +1.4
733,121 + +2.7
733,123 + +0.5
733,128 + +1.3
733,131 - +0.5
733,356 - PGA1_c07130 0.21 -1.4
733,356 - PGA1_c07130 0.21 +0.5
733,371 - PGA1_c07130 0.24 -1.0
733,435 + PGA1_c07130 0.38 +1.4
733,440 + PGA1_c07130 0.39 +0.3
733,440 + PGA1_c07130 0.39 +0.3
733,448 - PGA1_c07130 0.41 -0.2
733,448 - PGA1_c07130 0.41 -1.4
733,527 + PGA1_c07130 0.58 -0.5
733,527 + PGA1_c07130 0.58 +0.8
733,535 - PGA1_c07130 0.60 +0.9
733,543 - PGA1_c07130 0.62 +1.2
733,596 + PGA1_c07130 0.73 -0.2
733,604 - PGA1_c07130 0.75 -0.6
733,639 + PGA1_c07130 0.83 -0.7
733,657 + PGA1_c07130 0.87 -0.4
733,657 + PGA1_c07130 0.87 -1.1
733,657 + PGA1_c07130 0.87 -0.8
733,657 + PGA1_c07130 0.87 +0.2
733,657 + PGA1_c07130 0.87 +0.2
733,657 + PGA1_c07130 0.87 -0.4
733,657 + PGA1_c07130 0.87 -0.3
733,665 - PGA1_c07130 0.88 -0.2
733,665 - PGA1_c07130 0.88 -0.1
733,665 - PGA1_c07130 0.88 +0.1
733,665 - PGA1_c07130 0.88 +2.1
733,665 - PGA1_c07130 0.88 -1.7
733,669 + PGA1_c07130 0.89 +0.5
733,759 + +0.7
733,765 + +0.0
733,775 - -0.4
733,775 - +0.5
733,798 + +0.9
733,819 - +1.0
733,819 - +1.0
733,825 - +1.2
733,842 - +1.0
733,842 - +1.0
733,846 - +0.1
733,848 + PGA1_c07140 0.10 +0.7
733,853 + PGA1_c07140 0.10 -0.4
733,853 + PGA1_c07140 0.10 +1.0
733,861 - PGA1_c07140 0.11 +0.0
733,904 + PGA1_c07140 0.15 +0.9
733,934 + PGA1_c07140 0.17 +0.6
733,942 - PGA1_c07140 0.18 +0.1
733,942 - PGA1_c07140 0.18 +3.0
733,949 + PGA1_c07140 0.18 -1.2
733,949 + PGA1_c07140 0.18 -0.2
733,965 - PGA1_c07140 0.19 +0.3
733,994 + PGA1_c07140 0.22 +0.8
734,002 - PGA1_c07140 0.22 +0.1
734,023 + PGA1_c07140 0.24 -0.2
734,127 + PGA1_c07140 0.32 -0.4
734,135 - PGA1_c07140 0.33 +0.5
734,135 - PGA1_c07140 0.33 -0.1
734,135 - PGA1_c07140 0.33 +0.8
734,135 - PGA1_c07140 0.33 +1.4
734,169 - PGA1_c07140 0.36 -0.5
734,183 + PGA1_c07140 0.37 -0.1
734,183 + PGA1_c07140 0.37 +0.1
734,183 + PGA1_c07140 0.37 -0.1
734,183 + PGA1_c07140 0.37 +0.0
734,183 + PGA1_c07140 0.37 +0.6
734,191 - PGA1_c07140 0.37 -0.3
734,191 - PGA1_c07140 0.37 +1.5
734,191 - PGA1_c07140 0.37 -0.5
734,206 + PGA1_c07140 0.39 +0.4
734,207 - PGA1_c07140 0.39 -0.4
734,207 - PGA1_c07140 0.39 -0.5
734,210 - PGA1_c07140 0.39 +1.1
734,214 - PGA1_c07140 0.39 +1.2
734,228 + PGA1_c07140 0.40 -1.4
734,236 - PGA1_c07140 0.41 +2.0
734,236 - PGA1_c07140 0.41 +0.5
734,236 - PGA1_c07140 0.41 -1.1
734,236 - PGA1_c07140 0.41 +0.0
734,394 + PGA1_c07140 0.54 +1.5
734,394 + PGA1_c07140 0.54 +0.4
734,394 + PGA1_c07140 0.54 +0.3
734,408 - PGA1_c07140 0.55 +0.9
734,443 + PGA1_c07140 0.57 +0.6
734,512 + PGA1_c07140 0.63 +0.1
734,534 + PGA1_c07140 0.65 -0.8
734,542 - PGA1_c07140 0.65 +1.1
734,542 - PGA1_c07140 0.65 -0.4
734,552 - PGA1_c07140 0.66 +0.6
734,554 + PGA1_c07140 0.66 -0.5
734,579 + PGA1_c07140 0.68 +0.5
734,579 + PGA1_c07140 0.68 +1.2
734,587 - PGA1_c07140 0.69 -2.4
734,619 + PGA1_c07140 0.72 +0.9
734,619 + PGA1_c07140 0.72 +1.6
734,619 + PGA1_c07140 0.72 -2.0
734,627 - PGA1_c07140 0.72 -0.7
734,627 - PGA1_c07140 0.72 -0.6
734,644 + PGA1_c07140 0.74 +0.4
734,650 + PGA1_c07140 0.74 -0.9
734,652 - PGA1_c07140 0.74 +0.6
734,657 - PGA1_c07140 0.75 +0.4
734,657 - PGA1_c07140 0.75 -1.2
734,742 + PGA1_c07140 0.81 +0.7
734,745 - PGA1_c07140 0.82 +0.6
734,778 + PGA1_c07140 0.84 +0.7
734,802 + PGA1_c07140 0.86 +1.0
734,802 + PGA1_c07140 0.86 +0.3
734,802 + PGA1_c07140 0.86 -1.1
734,810 - PGA1_c07140 0.87 -0.6
734,810 - PGA1_c07140 0.87 +0.1
734,824 - PGA1_c07140 0.88 -0.9
734,860 + +0.5
734,865 + +1.1
734,878 - -0.0
734,937 - +0.4
734,966 - -1.1
735,037 + -0.8
735,041 - -1.3
735,045 - +0.6
735,068 + PGA1_c07150 0.12 +0.7
735,080 - PGA1_c07150 0.13 -0.7
735,089 - PGA1_c07150 0.15 -0.4
735,128 + PGA1_c07150 0.19 +0.7
735,129 + PGA1_c07150 0.20 +1.4
735,130 - PGA1_c07150 0.20 -0.3
735,136 - PGA1_c07150 0.20 +0.7
735,139 + PGA1_c07150 0.21 +1.7
735,139 + PGA1_c07150 0.21 +0.6
735,142 - PGA1_c07150 0.21 +0.4
735,147 - PGA1_c07150 0.22 -1.8
735,147 - PGA1_c07150 0.22 +0.9
735,147 - PGA1_c07150 0.22 -0.8
735,185 + PGA1_c07150 0.27 -1.2
735,185 + PGA1_c07150 0.27 +1.6
735,190 + PGA1_c07150 0.27 +1.5
735,238 - PGA1_c07150 0.33 +0.5
735,257 + PGA1_c07150 0.36 +0.3
735,265 - PGA1_c07150 0.37 +0.6
735,321 + PGA1_c07150 0.44 -0.7
735,328 + PGA1_c07150 0.44 +0.5
735,328 + PGA1_c07150 0.44 -0.6
735,376 - PGA1_c07150 0.50 -0.7
735,380 + PGA1_c07150 0.51 -0.1
735,406 - PGA1_c07150 0.54 +0.2
735,498 + PGA1_c07150 0.66 +0.2
735,517 - PGA1_c07150 0.68 -1.1
735,517 - PGA1_c07150 0.68 -2.5
735,517 - PGA1_c07150 0.68 -0.4
735,545 - PGA1_c07150 0.72 -0.2
735,580 - PGA1_c07150 0.76 -0.5
735,587 + PGA1_c07150 0.77 +1.2
735,587 + PGA1_c07150 0.77 +0.6
735,587 + PGA1_c07150 0.77 +0.1
735,644 + PGA1_c07150 0.84 +0.5
735,655 + PGA1_c07150 0.85 +0.3
735,657 + PGA1_c07150 0.86 -0.5
735,745 - -0.3
735,745 - -0.7
735,804 - +0.5
735,825 + -0.5
735,840 + -0.4
735,840 + -2.3
735,840 + -0.1
735,840 + -2.0
735,840 + +0.9
735,848 - -0.5
735,848 - +1.6
735,848 - +1.1
735,848 - -2.4
735,848 - +0.7
735,848 - -1.1
735,848 - +0.4
735,853 - -2.5
735,879 + +0.6
735,884 + -1.1
735,884 + -0.2
735,900 + +0.4
735,907 + -0.6
735,907 + +0.5
735,908 - -0.6
735,910 + +1.0
735,910 + +1.9
735,931 - PGA1_c07160 0.11 -0.8
735,961 + PGA1_c07160 0.13 +0.8

Or see this region's nucleotide sequence