Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g42

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g40 and HP15_p187g41 are separated by 259 nucleotidesHP15_p187g41 and HP15_p187g42 are separated by 26 nucleotidesHP15_p187g42 and HP15_p187g43 are separated by 137 nucleotides HP15_p187g40: HP15_p187g40 - GGDEF family protein, at 33,808 to 34,683 _p187g40 HP15_p187g41: HP15_p187g41 - hypothetical protein, at 34,943 to 35,161 _p187g41 HP15_p187g42: HP15_p187g42 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing-like protein, at 35,188 to 35,697 _p187g42 HP15_p187g43: HP15_p187g43 - conserved hypothetical protein, at 35,835 to 37,220 _p187g43 Position (kb) 35 36Strain fitness (log2 ratio) -2 -1 0 1 2at 34.188 kb on + strand, within HP15_p187g40at 34.241 kb on + strand, within HP15_p187g40at 34.272 kb on + strand, within HP15_p187g40at 34.273 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.321 kb on + strand, within HP15_p187g40at 34.329 kb on - strand, within HP15_p187g40at 34.382 kb on - strand, within HP15_p187g40at 34.421 kb on + strand, within HP15_p187g40at 34.441 kb on + strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.449 kb on - strand, within HP15_p187g40at 34.451 kb on + strand, within HP15_p187g40at 34.485 kb on - strand, within HP15_p187g40at 34.512 kb on + strand, within HP15_p187g40at 34.519 kb on + strand, within HP15_p187g40at 34.522 kb on + strand, within HP15_p187g40at 34.525 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.581 kb on - strand, within HP15_p187g40at 34.585 kb on + strand, within HP15_p187g40at 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.609 kb on + strandat 34.612 kb on - strandat 34.617 kb on - strandat 34.617 kb on - strandat 34.625 kb on + strandat 34.625 kb on + strandat 34.681 kb on - strandat 34.767 kb on + strandat 34.771 kb on + strandat 34.772 kb on + strandat 34.780 kb on - strandat 34.780 kb on - strandat 34.874 kb on + strandat 34.876 kb on + strandat 34.935 kb on + strandat 34.935 kb on + strandat 34.935 kb on + strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.943 kb on - strandat 34.962 kb on - strandat 34.995 kb on - strand, within HP15_p187g41at 35.000 kb on + strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.008 kb on - strand, within HP15_p187g41at 35.032 kb on + strand, within HP15_p187g41at 35.032 kb on + strand, within HP15_p187g41at 35.042 kb on - strand, within HP15_p187g41at 35.064 kb on + strand, within HP15_p187g41at 35.067 kb on + strand, within HP15_p187g41at 35.067 kb on + strand, within HP15_p187g41at 35.070 kb on - strand, within HP15_p187g41at 35.077 kb on - strand, within HP15_p187g41at 35.216 kb on + strandat 35.273 kb on + strand, within HP15_p187g42at 35.273 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.281 kb on - strand, within HP15_p187g42at 35.308 kb on + strand, within HP15_p187g42at 35.342 kb on - strand, within HP15_p187g42at 35.344 kb on + strand, within HP15_p187g42at 35.344 kb on + strand, within HP15_p187g42at 35.362 kb on - strand, within HP15_p187g42at 35.362 kb on - strand, within HP15_p187g42at 35.399 kb on + strand, within HP15_p187g42at 35.422 kb on - strand, within HP15_p187g42at 35.450 kb on - strand, within HP15_p187g42at 35.455 kb on - strand, within HP15_p187g42at 35.488 kb on + strand, within HP15_p187g42at 35.496 kb on - strand, within HP15_p187g42at 35.498 kb on + strand, within HP15_p187g42at 35.500 kb on + strand, within HP15_p187g42at 35.506 kb on - strand, within HP15_p187g42at 35.549 kb on + strand, within HP15_p187g42at 35.562 kb on + strand, within HP15_p187g42at 35.574 kb on + strand, within HP15_p187g42at 35.606 kb on + strand, within HP15_p187g42at 35.644 kb on + strand, within HP15_p187g42at 35.651 kb on + strandat 35.658 kb on - strandat 35.659 kb on - strandat 35.690 kb on + strandat 35.699 kb on + strandat 35.711 kb on + strandat 35.742 kb on + strandat 35.750 kb on - strandat 35.760 kb on - strandat 35.790 kb on + strandat 35.795 kb on + strandat 35.858 kb on + strandat 35.859 kb on - strandat 35.860 kb on - strandat 35.866 kb on - strandat 35.866 kb on - strandat 35.871 kb on - strandat 35.872 kb on - strandat 35.885 kb on + strandat 35.893 kb on - strandat 35.900 kb on - strandat 35.900 kb on - strandat 35.931 kb on - strandat 35.954 kb on + strandat 36.057 kb on - strand, within HP15_p187g43at 36.063 kb on + strand, within HP15_p187g43at 36.117 kb on + strand, within HP15_p187g43at 36.133 kb on + strand, within HP15_p187g43at 36.147 kb on + strand, within HP15_p187g43at 36.182 kb on - strand, within HP15_p187g43at 36.244 kb on - strand, within HP15_p187g43at 36.309 kb on + strand, within HP15_p187g43at 36.309 kb on + strand, within HP15_p187g43at 36.384 kb on - strand, within HP15_p187g43at 36.500 kb on + strand, within HP15_p187g43at 36.508 kb on - strand, within HP15_p187g43at 36.508 kb on - strand, within HP15_p187g43at 36.533 kb on + strand, within HP15_p187g43at 36.561 kb on + strand, within HP15_p187g43at 36.574 kb on - strand, within HP15_p187g43at 36.587 kb on + strand, within HP15_p187g43at 36.641 kb on + strand, within HP15_p187g43at 36.643 kb on + strand, within HP15_p187g43at 36.651 kb on - strand, within HP15_p187g43at 36.651 kb on - strand, within HP15_p187g43at 36.659 kb on - strand, within HP15_p187g43at 36.672 kb on - strand, within HP15_p187g43at 36.672 kb on - strand, within HP15_p187g43at 36.691 kb on + strand, within HP15_p187g43

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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34,188 + HP15_p187g40 0.43 +0.5
34,241 + HP15_p187g40 0.49 -0.4
34,272 + HP15_p187g40 0.53 +0.2
34,273 + HP15_p187g40 0.53 +1.1
34,321 + HP15_p187g40 0.59 -0.9
34,321 + HP15_p187g40 0.59 -0.8
34,329 - HP15_p187g40 0.59 +0.2
34,382 - HP15_p187g40 0.66 +1.7
34,421 + HP15_p187g40 0.70 +0.1
34,441 + HP15_p187g40 0.72 +1.7
34,449 - HP15_p187g40 0.73 +0.4
34,449 - HP15_p187g40 0.73 -0.3
34,451 + HP15_p187g40 0.73 +0.2
34,485 - HP15_p187g40 0.77 +0.2
34,512 + HP15_p187g40 0.80 +1.4
34,519 + HP15_p187g40 0.81 +0.0
34,522 + HP15_p187g40 0.82 +0.8
34,525 - HP15_p187g40 0.82 -0.5
34,581 - HP15_p187g40 0.88 -0.6
34,581 - HP15_p187g40 0.88 +0.3
34,585 + HP15_p187g40 0.89 +1.6
34,609 + -0.3
34,609 + +0.5
34,609 + +0.2
34,609 + +0.7
34,612 - -0.6
34,617 - +1.2
34,617 - -1.2
34,625 + -0.8
34,625 + -1.4
34,681 - +1.1
34,767 + +0.5
34,771 + -0.3
34,772 + -2.7
34,780 - +1.0
34,780 - -0.1
34,874 + -0.4
34,876 + -0.0
34,935 + -1.0
34,935 + +2.2
34,935 + -0.3
34,943 - +0.7
34,943 - -0.3
34,943 - -0.6
34,943 - -0.4
34,962 - -0.1
34,995 - HP15_p187g41 0.24 -0.9
35,000 + HP15_p187g41 0.26 -0.3
35,008 - HP15_p187g41 0.30 +0.8
35,008 - HP15_p187g41 0.30 +2.3
35,008 - HP15_p187g41 0.30 +0.5
35,032 + HP15_p187g41 0.41 -0.4
35,032 + HP15_p187g41 0.41 -1.0
35,042 - HP15_p187g41 0.45 -2.0
35,064 + HP15_p187g41 0.55 -0.7
35,067 + HP15_p187g41 0.57 +0.6
35,067 + HP15_p187g41 0.57 -0.3
35,070 - HP15_p187g41 0.58 -1.7
35,077 - HP15_p187g41 0.61 -0.8
35,216 + +1.2
35,273 + HP15_p187g42 0.17 +1.1
35,273 - HP15_p187g42 0.17 +0.7
35,281 - HP15_p187g42 0.18 +0.0
35,281 - HP15_p187g42 0.18 -0.0
35,281 - HP15_p187g42 0.18 -0.4
35,308 + HP15_p187g42 0.24 +0.7
35,342 - HP15_p187g42 0.30 -0.6
35,344 + HP15_p187g42 0.31 +0.8
35,344 + HP15_p187g42 0.31 +0.5
35,362 - HP15_p187g42 0.34 +0.1
35,362 - HP15_p187g42 0.34 +0.3
35,399 + HP15_p187g42 0.41 +0.7
35,422 - HP15_p187g42 0.46 -1.4
35,450 - HP15_p187g42 0.51 +0.9
35,455 - HP15_p187g42 0.52 +0.8
35,488 + HP15_p187g42 0.59 -1.0
35,496 - HP15_p187g42 0.60 +0.4
35,498 + HP15_p187g42 0.61 -0.2
35,500 + HP15_p187g42 0.61 -0.0
35,506 - HP15_p187g42 0.62 +2.0
35,549 + HP15_p187g42 0.71 -0.1
35,562 + HP15_p187g42 0.73 -0.2
35,574 + HP15_p187g42 0.76 +1.1
35,606 + HP15_p187g42 0.82 +0.4
35,644 + HP15_p187g42 0.89 +1.1
35,651 + +0.6
35,658 - +0.7
35,659 - +0.1
35,690 + -1.9
35,699 + -0.4
35,711 + +0.4
35,742 + -0.7
35,750 - +1.4
35,760 - -1.7
35,790 + +0.3
35,795 + +0.0
35,858 + -0.9
35,859 - +0.7
35,860 - -0.8
35,866 - +0.1
35,866 - +0.2
35,871 - -0.5
35,872 - -0.0
35,885 + -0.0
35,893 - +1.3
35,900 - +0.4
35,900 - -0.6
35,931 - +0.7
35,954 + +0.4
36,057 - HP15_p187g43 0.16 +0.2
36,063 + HP15_p187g43 0.16 -0.3
36,117 + HP15_p187g43 0.20 -0.0
36,133 + HP15_p187g43 0.22 +1.1
36,147 + HP15_p187g43 0.23 -1.0
36,182 - HP15_p187g43 0.25 -0.2
36,244 - HP15_p187g43 0.30 -1.6
36,309 + HP15_p187g43 0.34 +0.2
36,309 + HP15_p187g43 0.34 +1.7
36,384 - HP15_p187g43 0.40 -0.1
36,500 + HP15_p187g43 0.48 +0.2
36,508 - HP15_p187g43 0.49 +1.6
36,508 - HP15_p187g43 0.49 +0.5
36,533 + HP15_p187g43 0.50 -0.2
36,561 + HP15_p187g43 0.52 +0.8
36,574 - HP15_p187g43 0.53 -0.5
36,587 + HP15_p187g43 0.54 +0.2
36,641 + HP15_p187g43 0.58 +0.3
36,643 + HP15_p187g43 0.58 -1.7
36,651 - HP15_p187g43 0.59 +0.1
36,651 - HP15_p187g43 0.59 -0.4
36,659 - HP15_p187g43 0.59 -0.5
36,672 - HP15_p187g43 0.60 +0.4
36,672 - HP15_p187g43 0.60 +0.1
36,691 + HP15_p187g43 0.62 -0.0

Or see this region's nucleotide sequence