Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g1 and HP15_p187g2 overlap by 4 nucleotides HP15_p187g2 and HP15_p187g3 overlap by 1 nucleotides HP15_p187g3 and HP15_p187g4 are separated by 321 nucleotides HP15_p187g4 and HP15_p187g5 are separated by 176 nucleotides
HP15_p187g1: HP15_p187g1 - repeat-containing protein, at 47 to 769
_p187g1
HP15_p187g2: HP15_p187g2 - conserved hypothetical protein, secreted, at 766 to 1,227
_p187g2
HP15_p187g3: HP15_p187g3 - conserved hypothetical protein, secreted, at 1,227 to 2,045
_p187g3
HP15_p187g4: HP15_p187g4 - hypothetical protein, at 2,367 to 2,570
_p187g4
HP15_p187g5: HP15_p187g5 - hypothetical protein, at 2,747 to 3,067
_p187g5
Position (kb)
1
2
3 Strain fitness (log2 ratio)
-1
0
1
2 at 1.674 kb on + strand, within HP15_p187g3 at 2.057 kb on - strand at 2.090 kb on + strand at 2.098 kb on - strand at 2.126 kb on + strand at 2.140 kb on + strand at 2.149 kb on + strand at 2.157 kb on - strand at 2.170 kb on + strand at 2.244 kb on - strand at 2.248 kb on + strand at 2.248 kb on + strand at 2.249 kb on - strand at 2.256 kb on - strand at 2.392 kb on + strand, within HP15_p187g4 at 2.400 kb on - strand, within HP15_p187g4 at 2.446 kb on - strand, within HP15_p187g4 at 2.534 kb on + strand, within HP15_p187g4 at 2.548 kb on + strand, within HP15_p187g4 at 2.613 kb on - strand at 2.616 kb on - strand at 2.643 kb on + strand at 2.706 kb on + strand at 2.707 kb on - strand at 2.714 kb on - strand at 2.716 kb on - strand at 2.740 kb on + strand at 2.782 kb on + strand, within HP15_p187g5 at 2.790 kb on - strand, within HP15_p187g5 at 2.793 kb on + strand, within HP15_p187g5 at 2.877 kb on - strand, within HP15_p187g5 at 2.918 kb on + strand, within HP15_p187g5 at 2.939 kb on - strand, within HP15_p187g5 at 2.960 kb on - strand, within HP15_p187g5 at 2.974 kb on + strand, within HP15_p187g5 at 2.977 kb on - strand, within HP15_p187g5 at 2.982 kb on - strand, within HP15_p187g5 at 2.982 kb on - strand, within HP15_p187g5 at 3.029 kb on + strand, within HP15_p187g5
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,674 + HP15_p187g3 0.55 +0.6 2,057 - -0.8 2,090 + +0.0 2,098 - +1.1 2,126 + -0.9 2,140 + +1.0 2,149 + +1.3 2,157 - -0.3 2,170 + +0.1 2,244 - -0.1 2,248 + -0.2 2,248 + +0.8 2,249 - -0.2 2,256 - -0.9 2,392 + HP15_p187g4 0.12 -0.1 2,400 - HP15_p187g4 0.16 -0.1 2,446 - HP15_p187g4 0.39 +0.1 2,534 + HP15_p187g4 0.82 +0.3 2,548 + HP15_p187g4 0.89 -0.4 2,613 - +1.3 2,616 - -0.5 2,643 + -1.4 2,706 + +0.9 2,707 - -0.4 2,714 - +0.4 2,716 - -0.3 2,740 + -0.8 2,782 + HP15_p187g5 0.11 +0.2 2,790 - HP15_p187g5 0.13 +1.7 2,793 + HP15_p187g5 0.14 +2.0 2,877 - HP15_p187g5 0.40 -0.2 2,918 + HP15_p187g5 0.53 -0.4 2,939 - HP15_p187g5 0.60 +1.0 2,960 - HP15_p187g5 0.66 +1.4 2,974 + HP15_p187g5 0.71 +1.1 2,977 - HP15_p187g5 0.72 -0.7 2,982 - HP15_p187g5 0.73 -0.7 2,982 - HP15_p187g5 0.73 -1.7 3,029 + HP15_p187g5 0.88 -0.3
Or see this region's nucleotide sequence