Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4069 and HP15_4070 are separated by 62 nucleotides HP15_4070 and HP15_4071 overlap by 28 nucleotides HP15_4071 and HP15_4072 overlap by 1 nucleotides HP15_4072 and HP15_4073 are separated by 4 nucleotides HP15_4073 and HP15_4074 are separated by 38 nucleotides
HP15_4069: HP15_4069 - binding-protein-dependent transport systems inner membrane component, at 4,303,655 to 4,304,506
_4069
HP15_4070: HP15_4070 - antibiotic biosynthesis monooxygenase family enzyme, at 4,304,569 to 4,304,883
_4070
HP15_4071: HP15_4071 - hypothetical protein, at 4,304,856 to 4,304,969
_4071
HP15_4072: HP15_4072 - diguanylate cyclase with PAS/PAC sensor, at 4,304,969 to 4,307,230
_4072
HP15_4073: HP15_4073 - universal stress protein family protein, at 4,307,235 to 4,307,675
_4073
HP15_4074: HP15_4074 - C4-dicarboxylate transport system (permease large protein), at 4,307,714 to 4,308,985
_4074
Position (kb)
4304
4305
4306
4307
4308 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4303.972 kb on + strand, within HP15_4069 at 4303.972 kb on + strand, within HP15_4069 at 4304.033 kb on + strand, within HP15_4069 at 4304.054 kb on - strand, within HP15_4069 at 4304.097 kb on - strand, within HP15_4069 at 4304.131 kb on - strand, within HP15_4069 at 4304.131 kb on - strand, within HP15_4069 at 4304.165 kb on + strand, within HP15_4069 at 4304.173 kb on - strand, within HP15_4069 at 4304.173 kb on - strand, within HP15_4069 at 4304.228 kb on + strand, within HP15_4069 at 4304.236 kb on - strand, within HP15_4069 at 4304.236 kb on - strand, within HP15_4069 at 4304.393 kb on + strand, within HP15_4069 at 4304.393 kb on - strand, within HP15_4069 at 4304.395 kb on + strand, within HP15_4069 at 4304.403 kb on - strand, within HP15_4069 at 4304.403 kb on - strand, within HP15_4069 at 4304.490 kb on - strand at 4304.542 kb on - strand at 4304.587 kb on - strand at 4304.775 kb on - strand, within HP15_4070 at 4304.796 kb on + strand, within HP15_4070 at 4304.806 kb on + strand, within HP15_4070 at 4304.992 kb on + strand at 4305.002 kb on - strand at 4305.007 kb on + strand at 4305.015 kb on - strand at 4305.021 kb on - strand at 4305.151 kb on - strand at 4305.280 kb on + strand, within HP15_4072 at 4305.288 kb on - strand, within HP15_4072 at 4305.288 kb on - strand, within HP15_4072 at 4305.393 kb on - strand, within HP15_4072 at 4305.393 kb on - strand, within HP15_4072 at 4305.396 kb on + strand, within HP15_4072 at 4305.399 kb on - strand, within HP15_4072 at 4305.454 kb on + strand, within HP15_4072 at 4305.481 kb on - strand, within HP15_4072 at 4305.789 kb on + strand, within HP15_4072 at 4305.861 kb on - strand, within HP15_4072 at 4305.970 kb on - strand, within HP15_4072 at 4306.020 kb on + strand, within HP15_4072 at 4306.022 kb on + strand, within HP15_4072 at 4306.030 kb on - strand, within HP15_4072 at 4306.030 kb on - strand, within HP15_4072 at 4306.048 kb on - strand, within HP15_4072 at 4306.225 kb on - strand, within HP15_4072 at 4306.271 kb on + strand, within HP15_4072 at 4306.271 kb on + strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.279 kb on - strand, within HP15_4072 at 4306.281 kb on + strand, within HP15_4072 at 4306.294 kb on - strand, within HP15_4072 at 4306.456 kb on + strand, within HP15_4072 at 4306.464 kb on + strand, within HP15_4072 at 4306.472 kb on - strand, within HP15_4072 at 4306.658 kb on - strand, within HP15_4072 at 4306.674 kb on - strand, within HP15_4072 at 4306.697 kb on + strand, within HP15_4072 at 4306.712 kb on - strand, within HP15_4072 at 4306.806 kb on + strand, within HP15_4072 at 4307.018 kb on - strand at 4307.036 kb on + strand at 4307.054 kb on + strand at 4307.105 kb on + strand at 4307.107 kb on + strand at 4307.285 kb on - strand, within HP15_4073 at 4307.290 kb on + strand, within HP15_4073 at 4307.306 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.345 kb on + strand, within HP15_4073 at 4307.353 kb on + strand, within HP15_4073 at 4307.361 kb on - strand, within HP15_4073 at 4307.654 kb on - strand at 4307.684 kb on + strand at 4307.932 kb on - strand, within HP15_4074 at 4307.944 kb on - strand, within HP15_4074 at 4308.124 kb on - strand, within HP15_4074 at 4308.222 kb on + strand, within HP15_4074
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 4,303,972 + HP15_4069 0.37 +0.4 4,303,972 + HP15_4069 0.37 +0.9 4,304,033 + HP15_4069 0.44 +0.3 4,304,054 - HP15_4069 0.47 -0.2 4,304,097 - HP15_4069 0.52 -0.3 4,304,131 - HP15_4069 0.56 +0.7 4,304,131 - HP15_4069 0.56 -0.5 4,304,165 + HP15_4069 0.60 -0.2 4,304,173 - HP15_4069 0.61 +0.6 4,304,173 - HP15_4069 0.61 +0.5 4,304,228 + HP15_4069 0.67 -0.2 4,304,236 - HP15_4069 0.68 +0.5 4,304,236 - HP15_4069 0.68 +0.1 4,304,393 + HP15_4069 0.87 +0.9 4,304,393 - HP15_4069 0.87 +2.8 4,304,395 + HP15_4069 0.87 +0.5 4,304,403 - HP15_4069 0.88 +0.2 4,304,403 - HP15_4069 0.88 -0.2 4,304,490 - +0.0 4,304,542 - +0.3 4,304,587 - +1.7 4,304,775 - HP15_4070 0.65 +0.9 4,304,796 + HP15_4070 0.72 -0.3 4,304,806 + HP15_4070 0.75 +0.5 4,304,992 + +0.5 4,305,002 - +0.3 4,305,007 + +0.9 4,305,015 - +0.1 4,305,021 - +0.1 4,305,151 - +0.0 4,305,280 + HP15_4072 0.14 -0.3 4,305,288 - HP15_4072 0.14 -2.2 4,305,288 - HP15_4072 0.14 -0.2 4,305,393 - HP15_4072 0.19 -0.1 4,305,393 - HP15_4072 0.19 +0.1 4,305,396 + HP15_4072 0.19 +0.7 4,305,399 - HP15_4072 0.19 +0.1 4,305,454 + HP15_4072 0.21 -0.4 4,305,481 - HP15_4072 0.23 -1.7 4,305,789 + HP15_4072 0.36 -1.0 4,305,861 - HP15_4072 0.39 -0.4 4,305,970 - HP15_4072 0.44 -1.2 4,306,020 + HP15_4072 0.46 -0.4 4,306,022 + HP15_4072 0.47 -0.1 4,306,030 - HP15_4072 0.47 -0.8 4,306,030 - HP15_4072 0.47 -0.6 4,306,048 - HP15_4072 0.48 -0.3 4,306,225 - HP15_4072 0.56 -1.0 4,306,271 + HP15_4072 0.58 -0.6 4,306,271 + HP15_4072 0.58 -0.3 4,306,279 - HP15_4072 0.58 +0.1 4,306,279 - HP15_4072 0.58 -0.5 4,306,279 - HP15_4072 0.58 +0.3 4,306,281 + HP15_4072 0.58 -1.0 4,306,294 - HP15_4072 0.59 +0.8 4,306,456 + HP15_4072 0.66 +0.3 4,306,464 + HP15_4072 0.66 -0.3 4,306,472 - HP15_4072 0.66 -0.3 4,306,658 - HP15_4072 0.75 -0.5 4,306,674 - HP15_4072 0.75 +0.7 4,306,697 + HP15_4072 0.76 -0.3 4,306,712 - HP15_4072 0.77 -0.0 4,306,806 + HP15_4072 0.81 -0.6 4,307,018 - +1.5 4,307,036 + +0.3 4,307,054 + +0.4 4,307,105 + +0.9 4,307,107 + +0.7 4,307,285 - HP15_4073 0.11 +0.4 4,307,290 + HP15_4073 0.12 +0.7 4,307,306 + HP15_4073 0.16 +1.0 4,307,345 + HP15_4073 0.25 -1.1 4,307,345 + HP15_4073 0.25 -0.7 4,307,345 + HP15_4073 0.25 +0.8 4,307,353 + HP15_4073 0.27 +1.9 4,307,361 - HP15_4073 0.29 +3.2 4,307,654 - -0.7 4,307,684 + +0.4 4,307,932 - HP15_4074 0.17 +0.5 4,307,944 - HP15_4074 0.18 +0.3 4,308,124 - HP15_4074 0.32 -2.1 4,308,222 + HP15_4074 0.40 -0.3
Or see this region's nucleotide sequence