Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3435 and HP15_3437 overlap by 4 nucleotides HP15_3437 and HP15_3436 are separated by 11 nucleotides HP15_3436 and HP15_3438 are separated by 110 nucleotides HP15_3438 and HP15_3439 are separated by 144 nucleotides
HP15_3435: HP15_3435 - methyl-accepting chemotaxis protein, at 3,613,444 to 3,614,964
_3435
HP15_3437: HP15_3437 - electron transport SCO1/SenC-like protein, at 3,614,961 to 3,615,482
_3437
HP15_3436: HP15_3436 - hypothetical protein, at 3,615,494 to 3,615,607
_3436
HP15_3438: HP15_3438 - lipid A export ATP-binding/permease protein msbA, at 3,615,718 to 3,617,541
_3438
HP15_3439: HP15_3439 - conserved hypothetical protein, membrane, at 3,617,686 to 3,619,140
_3439
Position (kb)
3615
3616
3617
3618 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3614.724 kb on + strand, within HP15_3435 at 3614.727 kb on - strand, within HP15_3435 at 3614.813 kb on + strand at 3614.941 kb on - strand at 3615.051 kb on - strand, within HP15_3437 at 3615.089 kb on - strand, within HP15_3437 at 3615.094 kb on - strand, within HP15_3437 at 3615.118 kb on + strand, within HP15_3437 at 3615.126 kb on - strand, within HP15_3437 at 3615.260 kb on + strand, within HP15_3437 at 3615.509 kb on - strand, within HP15_3436 at 3615.623 kb on - strand at 3615.734 kb on + strand at 3615.742 kb on - strand at 3615.761 kb on - strand at 3615.870 kb on - strand at 3615.870 kb on - strand at 3615.960 kb on + strand, within HP15_3438 at 3616.009 kb on + strand, within HP15_3438 at 3616.219 kb on + strand, within HP15_3438 at 3616.252 kb on + strand, within HP15_3438 at 3616.260 kb on - strand, within HP15_3438 at 3616.260 kb on - strand, within HP15_3438 at 3616.285 kb on - strand, within HP15_3438 at 3616.295 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.591 kb on - strand, within HP15_3438 at 3616.697 kb on - strand, within HP15_3438 at 3616.718 kb on - strand, within HP15_3438 at 3616.744 kb on + strand, within HP15_3438 at 3616.752 kb on - strand, within HP15_3438 at 3616.815 kb on + strand, within HP15_3438 at 3616.824 kb on + strand, within HP15_3438 at 3616.847 kb on + strand, within HP15_3438 at 3616.906 kb on + strand, within HP15_3438 at 3616.965 kb on - strand, within HP15_3438 at 3616.981 kb on - strand, within HP15_3438 at 3616.986 kb on - strand, within HP15_3438 at 3617.009 kb on - strand, within HP15_3438 at 3617.052 kb on + strand, within HP15_3438 at 3617.060 kb on - strand, within HP15_3438 at 3617.128 kb on - strand, within HP15_3438 at 3617.269 kb on + strand, within HP15_3438 at 3617.331 kb on + strand, within HP15_3438 at 3617.403 kb on - strand at 3617.421 kb on + strand at 3617.444 kb on - strand at 3617.444 kb on - strand at 3617.480 kb on + strand at 3617.488 kb on - strand at 3617.495 kb on - strand at 3617.584 kb on + strand at 3617.610 kb on - strand at 3617.683 kb on - strand at 3617.828 kb on + strand at 3617.930 kb on + strand, within HP15_3439 at 3618.006 kb on + strand, within HP15_3439 at 3618.017 kb on + strand, within HP15_3439 at 3618.025 kb on - strand, within HP15_3439 at 3618.025 kb on - strand, within HP15_3439 at 3618.040 kb on + strand, within HP15_3439 at 3618.122 kb on + strand, within HP15_3439 at 3618.170 kb on + strand, within HP15_3439 at 3618.364 kb on + strand, within HP15_3439 at 3618.364 kb on + strand, within HP15_3439 at 3618.364 kb on + strand, within HP15_3439 at 3618.364 kb on + strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439 at 3618.372 kb on - strand, within HP15_3439
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 3,614,724 + HP15_3435 0.84 +0.3 3,614,727 - HP15_3435 0.84 +1.7 3,614,813 + +0.4 3,614,941 - -0.1 3,615,051 - HP15_3437 0.17 -0.3 3,615,089 - HP15_3437 0.25 +1.0 3,615,094 - HP15_3437 0.25 -0.6 3,615,118 + HP15_3437 0.30 +0.7 3,615,126 - HP15_3437 0.32 +1.4 3,615,260 + HP15_3437 0.57 +1.2 3,615,509 - HP15_3436 0.13 -0.3 3,615,623 - -1.5 3,615,734 + +0.1 3,615,742 - -0.1 3,615,761 - +0.6 3,615,870 - -0.3 3,615,870 - +0.0 3,615,960 + HP15_3438 0.13 +1.6 3,616,009 + HP15_3438 0.16 +0.3 3,616,219 + HP15_3438 0.27 -0.2 3,616,252 + HP15_3438 0.29 -0.9 3,616,260 - HP15_3438 0.30 -0.2 3,616,260 - HP15_3438 0.30 +2.2 3,616,285 - HP15_3438 0.31 -0.1 3,616,295 + HP15_3438 0.32 -0.1 3,616,422 + HP15_3438 0.39 -0.5 3,616,422 + HP15_3438 0.39 -1.2 3,616,422 + HP15_3438 0.39 +0.7 3,616,422 + HP15_3438 0.39 -2.5 3,616,422 + HP15_3438 0.39 -0.6 3,616,422 + HP15_3438 0.39 -0.1 3,616,422 + HP15_3438 0.39 +0.5 3,616,430 - HP15_3438 0.39 -1.5 3,616,430 - HP15_3438 0.39 +0.7 3,616,430 - HP15_3438 0.39 -0.3 3,616,430 - HP15_3438 0.39 -0.2 3,616,430 - HP15_3438 0.39 +0.4 3,616,591 - HP15_3438 0.48 +0.8 3,616,697 - HP15_3438 0.54 -0.7 3,616,718 - HP15_3438 0.55 -1.0 3,616,744 + HP15_3438 0.56 -0.4 3,616,752 - HP15_3438 0.57 -0.8 3,616,815 + HP15_3438 0.60 -1.6 3,616,824 + HP15_3438 0.61 -0.3 3,616,847 + HP15_3438 0.62 -0.8 3,616,906 + HP15_3438 0.65 +0.1 3,616,965 - HP15_3438 0.68 -0.6 3,616,981 - HP15_3438 0.69 -1.5 3,616,986 - HP15_3438 0.70 -0.2 3,617,009 - HP15_3438 0.71 +1.2 3,617,052 + HP15_3438 0.73 +0.2 3,617,060 - HP15_3438 0.74 +0.6 3,617,128 - HP15_3438 0.77 +1.0 3,617,269 + HP15_3438 0.85 -0.7 3,617,331 + HP15_3438 0.88 -0.4 3,617,403 - +3.0 3,617,421 + -0.1 3,617,444 - -1.8 3,617,444 - -2.1 3,617,480 + -0.8 3,617,488 - +0.1 3,617,495 - -1.2 3,617,584 + +0.4 3,617,610 - +1.8 3,617,683 - -0.0 3,617,828 + -0.3 3,617,930 + HP15_3439 0.17 +0.8 3,618,006 + HP15_3439 0.22 -0.8 3,618,017 + HP15_3439 0.23 +1.0 3,618,025 - HP15_3439 0.23 -0.6 3,618,025 - HP15_3439 0.23 +0.5 3,618,040 + HP15_3439 0.24 +0.8 3,618,122 + HP15_3439 0.30 +0.7 3,618,170 + HP15_3439 0.33 -0.2 3,618,364 + HP15_3439 0.47 -0.0 3,618,364 + HP15_3439 0.47 +1.0 3,618,364 + HP15_3439 0.47 +0.8 3,618,364 + HP15_3439 0.47 -0.3 3,618,372 - HP15_3439 0.47 +0.4 3,618,372 - HP15_3439 0.47 +0.3 3,618,372 - HP15_3439 0.47 +0.5 3,618,372 - HP15_3439 0.47 -0.0 3,618,372 - HP15_3439 0.47 -0.1 3,618,372 - HP15_3439 0.47 +0.1 3,618,372 - HP15_3439 0.47 +0.8 3,618,372 - HP15_3439 0.47 +0.3
Or see this region's nucleotide sequence