Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35460

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,717,085	+		PGA1_c35440	0.60	+0.8
3,717,085	+		PGA1_c35440	0.60	+0.9
3,717,085	-		PGA1_c35440	0.60	+0.1
3,717,095	+		PGA1_c35440	0.63	+1.5
3,717,096	+		PGA1_c35440	0.63	+0.7
3,717,100	+		PGA1_c35440	0.64	+0.6
3,717,103	-		PGA1_c35440	0.65	+0.9
3,717,103	-		PGA1_c35440	0.65	+0.2
3,717,108	-		PGA1_c35440	0.66	+0.5
3,717,112	+		PGA1_c35440	0.68	+1.1
3,717,176	+		PGA1_c35440	0.86	-1.3
3,717,176	+		PGA1_c35440	0.86	+0.3
3,717,176	+		PGA1_c35440	0.86	+1.0
3,717,176	+		PGA1_c35440	0.86	+1.1
3,717,176	+		PGA1_c35440	0.86	-1.9
3,717,176	+		PGA1_c35440	0.86	-1.3
3,717,176	+		PGA1_c35440	0.86	-0.3
3,717,176	+		PGA1_c35440	0.86	-0.7
3,717,176	+		PGA1_c35440	0.86	-0.1
3,717,176	+		PGA1_c35440	0.86	-0.3
3,717,184	-		PGA1_c35440	0.89	-2.2
3,717,184	-		PGA1_c35440	0.89	+0.8
3,717,184	-		PGA1_c35440	0.89	+0.3
3,717,184	-		PGA1_c35440	0.89	+0.1
3,717,184	-		PGA1_c35440	0.89	-0.4
3,717,195	-				-0.3
3,717,234	-				+0.1
3,717,313	+				+0.1
3,717,326	-				-1.0
3,717,345	+				-1.5
3,717,364	+				-2.0
3,717,364	+				-1.1
3,717,364	+				+0.6
3,717,364	+				-0.1
3,717,364	+				+1.1
3,717,372	-				+0.4
3,717,372	-				-1.9
3,717,372	-				-0.3
3,717,374	+				-0.1
3,717,376	+				+0.1
3,717,382	-				-1.8
3,717,510	-				-0.3
3,717,541	-				-1.6
3,717,564	-				+0.5
3,717,571	+				-0.0
3,717,571	+				-0.7
3,717,571	+				+0.0
3,717,571	+				+0.4
3,717,571	+				+0.5
3,717,571	+				+0.2
3,717,577	-				-0.1
3,717,579	-				+0.3
3,717,579	-				-1.8
3,717,579	-				+0.7
3,717,579	-				+1.5
3,717,579	-				+0.5
3,717,595	-				-0.7
3,717,609	+				-1.5
3,717,617	-		PGA1_c35450	0.11	-0.4
3,717,653	+		PGA1_c35450	0.20	+0.7
3,717,661	+		PGA1_c35450	0.22	-0.1
3,717,661	+		PGA1_c35450	0.22	-0.3
3,717,661	+		PGA1_c35450	0.22	+0.4
3,717,661	+		PGA1_c35450	0.22	+0.1
3,717,661	+		PGA1_c35450	0.22	+0.5
3,717,661	+		PGA1_c35450	0.22	-0.0
3,717,661	+		PGA1_c35450	0.22	-1.1
3,717,661	+		PGA1_c35450	0.22	+0.1
3,717,661	+		PGA1_c35450	0.22	+0.7
3,717,661	+		PGA1_c35450	0.22	+0.5
3,717,669	-		PGA1_c35450	0.24	-1.9
3,717,669	-		PGA1_c35450	0.24	-0.3
3,717,669	-		PGA1_c35450	0.24	-0.1
3,717,669	-		PGA1_c35450	0.24	-1.3
3,717,669	-		PGA1_c35450	0.24	-1.4
3,717,669	-		PGA1_c35450	0.24	+1.6
3,717,669	-		PGA1_c35450	0.24	-0.3
3,717,669	-		PGA1_c35450	0.24	-1.6
3,717,669	-		PGA1_c35450	0.24	+1.3
3,717,669	-		PGA1_c35450	0.24	+0.3
3,717,669	-		PGA1_c35450	0.24	-1.0
3,717,669	-		PGA1_c35450	0.24	-0.9
3,717,669	-		PGA1_c35450	0.24	+0.5
3,717,669	-		PGA1_c35450	0.24	-0.6
3,717,669	-		PGA1_c35450	0.24	-0.9
3,717,669	-		PGA1_c35450	0.24	-2.1
3,717,669	-		PGA1_c35450	0.24	+0.2
3,717,669	-		PGA1_c35450	0.24	-0.3
3,717,718	+		PGA1_c35450	0.37	+0.2
3,717,718	+		PGA1_c35450	0.37	+0.7
3,717,718	+		PGA1_c35450	0.37	+0.5
3,717,719	-		PGA1_c35450	0.37	+0.7
3,717,723	+		PGA1_c35450	0.38	-0.1
3,717,726	-		PGA1_c35450	0.39	+0.1
3,717,726	-		PGA1_c35450	0.39	-0.5
3,717,726	-		PGA1_c35450	0.39	+1.2
3,717,726	-		PGA1_c35450	0.39	-1.3
3,717,726	-		PGA1_c35450	0.39	-2.4
3,717,726	-		PGA1_c35450	0.39	-0.6
3,717,726	-		PGA1_c35450	0.39	-0.3
3,717,726	-		PGA1_c35450	0.39	-0.4
3,717,726	-		PGA1_c35450	0.39	-1.5
3,717,731	-		PGA1_c35450	0.40	-0.6
3,717,736	-		PGA1_c35450	0.41	+0.1
3,717,767	-		PGA1_c35450	0.49	+0.5
3,717,774	-		PGA1_c35450	0.51	-2.4
3,717,808	-		PGA1_c35450	0.59	+1.1
3,717,829	-		PGA1_c35450	0.65	+0.7
3,717,829	-		PGA1_c35450	0.65	-1.0
3,717,829	-		PGA1_c35450	0.65	+0.3
3,717,838	+		PGA1_c35450	0.67	+1.2
3,717,839	-		PGA1_c35450	0.67	-0.3
3,717,845	-		PGA1_c35450	0.69	+0.6
3,717,845	-		PGA1_c35450	0.69	-0.7
3,717,882	+		PGA1_c35450	0.78	+1.0
3,717,890	-		PGA1_c35450	0.80	+0.7
3,717,902	+		PGA1_c35450	0.83	-0.3
3,717,902	+		PGA1_c35450	0.83	+0.9
3,717,902	+		PGA1_c35450	0.83	+0.8
3,717,902	+		PGA1_c35450	0.83	+0.0
3,717,902	+		PGA1_c35450	0.83	+0.5
3,717,902	+		PGA1_c35450	0.83	-1.2
3,717,910	-		PGA1_c35450	0.85	+0.1
3,717,910	-		PGA1_c35450	0.85	-1.9
3,717,910	-		PGA1_c35450	0.85	-1.5
3,717,910	-		PGA1_c35450	0.85	-0.8
3,717,910	-		PGA1_c35450	0.85	-1.0
3,717,978	+				-0.9
3,718,026	+				-0.3
3,718,026	+				-2.2
3,718,065	+		PGA1_c35460	0.12	+0.2
3,718,073	-		PGA1_c35460	0.14	+0.3
3,718,075	+		PGA1_c35460	0.15	-1.4
3,718,083	-		PGA1_c35460	0.17	-0.5
3,718,112	-		PGA1_c35460	0.23	-1.2
3,718,128	+		PGA1_c35460	0.27	+0.1
3,718,128	+		PGA1_c35460	0.27	+0.8
3,718,128	+		PGA1_c35460	0.27	-2.1
3,718,128	+		PGA1_c35460	0.27	-1.2
3,718,128	+		PGA1_c35460	0.27	-2.6
3,718,128	+		PGA1_c35460	0.27	-1.4
3,718,128	+		PGA1_c35460	0.27	+0.2
3,718,128	+		PGA1_c35460	0.27	-1.0
3,718,128	+		PGA1_c35460	0.27	-0.6
3,718,128	+		PGA1_c35460	0.27	-0.1
3,718,128	+		PGA1_c35460	0.27	-1.7
3,718,128	+		PGA1_c35460	0.27	+1.0
3,718,128	+		PGA1_c35460	0.27	-1.2
3,718,128	+		PGA1_c35460	0.27	-0.3
3,718,128	+		PGA1_c35460	0.27	-0.1
3,718,136	-		PGA1_c35460	0.29	+1.3
3,718,136	-		PGA1_c35460	0.29	+0.2
3,718,136	-		PGA1_c35460	0.29	+0.1
3,718,136	-		PGA1_c35460	0.29	+0.9
3,718,136	-		PGA1_c35460	0.29	+0.3
3,718,136	-		PGA1_c35460	0.29	-2.0
3,718,136	-		PGA1_c35460	0.29	-0.8
3,718,136	-		PGA1_c35460	0.29	-1.2
3,718,136	-		PGA1_c35460	0.29	-0.7
3,718,136	-		PGA1_c35460	0.29	-0.7
3,718,136	-		PGA1_c35460	0.29	-0.3
3,718,136	-		PGA1_c35460	0.29	-0.5
3,718,136	-		PGA1_c35460	0.29	+0.5
3,718,138	+		PGA1_c35460	0.30	-0.3
3,718,138	+		PGA1_c35460	0.30	-0.3
3,718,138	+		PGA1_c35460	0.30	-0.9
3,718,156	+		PGA1_c35460	0.34	+0.1
3,718,156	+		PGA1_c35460	0.34	-0.7
3,718,166	-		PGA1_c35460	0.36	-0.3
3,718,173	+		PGA1_c35460	0.38	-1.4
3,718,207	+		PGA1_c35460	0.46	+0.3
3,718,217	+		PGA1_c35460	0.48	+0.0
3,718,217	+		PGA1_c35460	0.48	-0.1
3,718,220	-		PGA1_c35460	0.49	-1.1
3,718,223	+		PGA1_c35460	0.50	+0.5
3,718,330	+		PGA1_c35460	0.75	+0.9
3,718,357	-		PGA1_c35460	0.81	+0.0
3,718,384	+		PGA1_c35460	0.88	-0.5
3,718,384	+		PGA1_c35460	0.88	+0.1
3,718,389	+		PGA1_c35460	0.89	-0.3
3,718,392	-		PGA1_c35460	0.90	+0.9
3,718,402	-				+0.3
3,718,416	-				+0.1
3,718,457	-				-0.9
3,718,480	-		PGA1_c35470	0.16	-1.6
3,718,487	+		PGA1_c35470	0.19	-2.2
3,718,511	+		PGA1_c35470	0.28	-0.4
3,718,511	+		PGA1_c35470	0.28	-1.5
3,718,511	+		PGA1_c35470	0.28	-2.7
3,718,511	+		PGA1_c35470	0.28	+0.5
3,718,511	+		PGA1_c35470	0.28	+0.6
3,718,511	+		PGA1_c35470	0.28	-0.2
3,718,511	+		PGA1_c35470	0.28	-0.4
3,718,511	+		PGA1_c35470	0.28	-0.1
3,718,511	+		PGA1_c35470	0.28	-0.9
3,718,511	+		PGA1_c35470	0.28	+0.0
3,718,511	+		PGA1_c35470	0.28	-0.0
3,718,516	+		PGA1_c35470	0.30	-0.2
3,718,519	-		PGA1_c35470	0.31	+3.4
3,718,519	-		PGA1_c35470	0.31	+0.7
3,718,519	-		PGA1_c35470	0.31	+1.5
3,718,519	-		PGA1_c35470	0.31	+1.0
3,718,519	-		PGA1_c35470	0.31	-0.4
3,718,519	-		PGA1_c35470	0.31	+2.1
3,718,519	-		PGA1_c35470	0.31	+0.3
3,718,519	-		PGA1_c35470	0.31	-2.7
3,718,519	-		PGA1_c35470	0.31	+0.0
3,718,519	-		PGA1_c35470	0.31	-1.1
3,718,519	-		PGA1_c35470	0.31	-0.4
3,718,519	-		PGA1_c35470	0.31	-2.0
3,718,592	+		PGA1_c35470	0.58	-1.4
3,718,605	-		PGA1_c35470	0.62	-0.5
3,718,676	+		PGA1_c35470	0.88	+0.1
3,718,676	+		PGA1_c35470	0.88	-0.9
3,718,676	+		PGA1_c35470	0.88	-0.7
3,718,749	-				-2.1
3,718,774	-				-2.1
3,718,780	+				-0.4
3,718,859	+		PGA1_c35480	0.16	-3.7
3,718,933	+		PGA1_c35480	0.23	-1.2
3,719,035	+		PGA1_c35480	0.34	-2.3
3,719,069	+		PGA1_c35480	0.37	-3.4
3,719,082	-		PGA1_c35480	0.39	-1.9
3,719,125	-		PGA1_c35480	0.43	-2.5
3,719,150	-		PGA1_c35480	0.46	-2.1
3,719,153	-		PGA1_c35480	0.46	-2.1
3,719,157	+		PGA1_c35480	0.47	-2.7
3,719,211	+		PGA1_c35480	0.52	-1.6
3,719,218	+		PGA1_c35480	0.53	-3.0
3,719,219	-		PGA1_c35480	0.53	-2.1
3,719,223	+		PGA1_c35480	0.53	-2.9
3,719,231	-		PGA1_c35480	0.54	-2.9
3,719,288	+		PGA1_c35480	0.60	-2.7
3,719,296	-		PGA1_c35480	0.61	-2.2
3,719,318	+		PGA1_c35480	0.63	-4.6
3,719,375	+		PGA1_c35480	0.69	-2.2
3,719,375	+		PGA1_c35480	0.69	-2.8
3,719,375	+		PGA1_c35480	0.69	-3.1
3,719,375	+		PGA1_c35480	0.69	-2.3
3,719,383	-		PGA1_c35480	0.70	-1.9
3,719,383	-		PGA1_c35480	0.70	-1.4
3,719,383	-		PGA1_c35480	0.70	-1.3
3,719,383	-		PGA1_c35480	0.70	-2.6
3,719,383	-		PGA1_c35480	0.70	-2.9
3,719,396	+		PGA1_c35480	0.71	-1.9
3,719,431	-		PGA1_c35480	0.75	-2.2