Strain Fitness in Marinobacter adhaerens HP15 around HP15_3229

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3228 and HP15_3229 are separated by 115 nucleotidesHP15_3229 and HP15_3230 overlap by 4 nucleotidesHP15_3230 and HP15_3231 overlap by 8 nucleotides HP15_3228: HP15_3228 - phosphoribosylamine-glycine ligase, at 3,380,803 to 3,382,089 _3228 HP15_3229: HP15_3229 - abhydrolase domain-containing protein 6, at 3,382,205 to 3,383,143 _3229 HP15_3230: HP15_3230 - hypothetical protein, at 3,383,140 to 3,383,259 _3230 HP15_3231: HP15_3231 - sodium/hydrogen exchanger, at 3,383,252 to 3,384,826 _3231 Position (kb) 3382 3383 3384Strain fitness (log2 ratio) -1 0 1 2at 3382.083 kb on + strandat 3382.083 kb on + strandat 3382.091 kb on - strandat 3382.269 kb on + strandat 3382.274 kb on + strandat 3382.297 kb on + strandat 3382.310 kb on - strand, within HP15_3229at 3382.614 kb on - strand, within HP15_3229at 3382.755 kb on - strand, within HP15_3229at 3382.977 kb on - strand, within HP15_3229at 3383.067 kb on - strandat 3383.073 kb on + strandat 3383.134 kb on + strandat 3383.203 kb on - strand, within HP15_3230at 3383.205 kb on + strand, within HP15_3230at 3383.208 kb on - strand, within HP15_3230at 3383.274 kb on + strandat 3383.403 kb on + strandat 3383.405 kb on + strandat 3383.405 kb on + strandat 3383.430 kb on - strand, within HP15_3231at 3383.492 kb on - strand, within HP15_3231at 3383.515 kb on + strand, within HP15_3231at 3383.519 kb on + strand, within HP15_3231at 3383.712 kb on - strand, within HP15_3231at 3383.798 kb on + strand, within HP15_3231

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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3,382,083 + +0.4
3,382,083 + -0.8
3,382,091 - +0.1
3,382,269 + -0.8
3,382,274 + -0.7
3,382,297 + +0.3
3,382,310 - HP15_3229 0.11 +0.9
3,382,614 - HP15_3229 0.44 +0.4
3,382,755 - HP15_3229 0.59 -0.7
3,382,977 - HP15_3229 0.82 -1.3
3,383,067 - -1.3
3,383,073 + +0.3
3,383,134 + -0.3
3,383,203 - HP15_3230 0.53 +0.7
3,383,205 + HP15_3230 0.54 -0.0
3,383,208 - HP15_3230 0.57 +0.3
3,383,274 + +0.2
3,383,403 + +2.2
3,383,405 + -0.1
3,383,405 + -1.1
3,383,430 - HP15_3231 0.11 -1.0
3,383,492 - HP15_3231 0.15 -0.1
3,383,515 + HP15_3231 0.17 -0.1
3,383,519 + HP15_3231 0.17 +0.0
3,383,712 - HP15_3231 0.29 -0.4
3,383,798 + HP15_3231 0.35 +2.2

Or see this region's nucleotide sequence