Strain Fitness in Marinobacter adhaerens HP15 around HP15_3061

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3059 and HP15_3060 are separated by 238 nucleotidesHP15_3060 and HP15_3061 are separated by 74 nucleotidesHP15_3061 and HP15_3062 are separated by 86 nucleotides HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709 _3059 HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412 _3060 HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367 _3061 HP15_3062: HP15_3062 - lipoprotein, at 3,213,454 to 3,214,215 _3062 Position (kb) 3211 3212 3213 3214Strain fitness (log2 ratio) -2 -1 0 1 2at 3210.820 kb on - strandat 3210.824 kb on + strandat 3211.059 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.205 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.419 kb on - strandat 3211.419 kb on - strandat 3211.483 kb on - strandat 3211.529 kb on + strandat 3211.537 kb on - strandat 3211.542 kb on - strandat 3211.723 kb on + strand, within HP15_3061at 3211.723 kb on + strand, within HP15_3061at 3211.730 kb on + strand, within HP15_3061at 3211.731 kb on - strand, within HP15_3061at 3211.774 kb on + strand, within HP15_3061at 3212.051 kb on - strand, within HP15_3061at 3212.102 kb on - strand, within HP15_3061at 3212.190 kb on + strand, within HP15_3061at 3212.425 kb on + strand, within HP15_3061at 3212.443 kb on - strand, within HP15_3061at 3212.464 kb on - strand, within HP15_3061at 3212.596 kb on - strand, within HP15_3061at 3212.630 kb on + strand, within HP15_3061at 3212.633 kb on - strand, within HP15_3061at 3212.671 kb on + strand, within HP15_3061at 3212.713 kb on - strand, within HP15_3061at 3212.959 kb on + strand, within HP15_3061at 3213.024 kb on + strand, within HP15_3061at 3213.118 kb on + strand, within HP15_3061at 3213.127 kb on + strand, within HP15_3061at 3213.140 kb on - strand, within HP15_3061at 3213.238 kb on + strandat 3213.244 kb on + strandat 3213.506 kb on - strandat 3213.722 kb on - strand, within HP15_3062at 3213.722 kb on - strand, within HP15_3062at 3213.832 kb on + strand, within HP15_3062at 3213.867 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.881 kb on + strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3213.889 kb on - strand, within HP15_3062at 3214.033 kb on + strand, within HP15_3062at 3214.098 kb on + strand, within HP15_3062at 3214.106 kb on - strand, within HP15_3062at 3214.178 kb on + strandat 3214.207 kb on + strandat 3214.217 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
remove
3,210,820 - -0.4
3,210,824 + -0.5
3,211,059 - HP15_3060 0.24 -0.5
3,211,165 - HP15_3060 0.47 -0.6
3,211,165 - HP15_3060 0.47 -0.9
3,211,205 - HP15_3060 0.55 -1.6
3,211,245 - HP15_3060 0.64 -0.7
3,211,245 - HP15_3060 0.64 +0.0
3,211,419 - -2.2
3,211,419 - -1.5
3,211,483 - -0.5
3,211,529 + -1.0
3,211,537 - -0.2
3,211,542 - -0.3
3,211,723 + HP15_3061 0.13 +1.0
3,211,723 + HP15_3061 0.13 +0.7
3,211,730 + HP15_3061 0.13 -1.6
3,211,731 - HP15_3061 0.13 -1.1
3,211,774 + HP15_3061 0.15 -0.6
3,212,051 - HP15_3061 0.30 -1.3
3,212,102 - HP15_3061 0.33 -1.4
3,212,190 + HP15_3061 0.37 -1.5
3,212,425 + HP15_3061 0.50 +0.2
3,212,443 - HP15_3061 0.51 +0.1
3,212,464 - HP15_3061 0.52 -1.2
3,212,596 - HP15_3061 0.59 -1.3
3,212,630 + HP15_3061 0.61 -2.4
3,212,633 - HP15_3061 0.61 -0.6
3,212,671 + HP15_3061 0.63 +0.9
3,212,713 - HP15_3061 0.65 -0.8
3,212,959 + HP15_3061 0.78 +0.9
3,213,024 + HP15_3061 0.82 -0.9
3,213,118 + HP15_3061 0.87 -1.2
3,213,127 + HP15_3061 0.87 +0.1
3,213,140 - HP15_3061 0.88 +0.2
3,213,238 + -0.4
3,213,244 + +2.2
3,213,506 - -0.4
3,213,722 - HP15_3062 0.35 -0.5
3,213,722 - HP15_3062 0.35 -0.3
3,213,832 + HP15_3062 0.50 +0.8
3,213,867 + HP15_3062 0.54 -2.5
3,213,881 + HP15_3062 0.56 +1.3
3,213,881 + HP15_3062 0.56 +0.4
3,213,881 + HP15_3062 0.56 +0.3
3,213,889 - HP15_3062 0.57 -0.9
3,213,889 - HP15_3062 0.57 +1.9
3,213,889 - HP15_3062 0.57 +1.8
3,213,889 - HP15_3062 0.57 -0.8
3,214,033 + HP15_3062 0.76 -0.5
3,214,098 + HP15_3062 0.85 +0.6
3,214,106 - HP15_3062 0.86 -0.3
3,214,178 + +0.0
3,214,207 + +0.3
3,214,217 + +0.5

Or see this region's nucleotide sequence