Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3059 and HP15_3060 are separated by 238 nucleotides HP15_3060 and HP15_3061 are separated by 74 nucleotides HP15_3061 and HP15_3062 are separated by 86 nucleotides
HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709
_3059
HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412
_3060
HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367
_3061
HP15_3062: HP15_3062 - lipoprotein, at 3,213,454 to 3,214,215
_3062
Position (kb)
3211
3212
3213
3214 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3210.820 kb on - strand at 3210.824 kb on + strand at 3211.059 kb on - strand, within HP15_3060 at 3211.165 kb on - strand, within HP15_3060 at 3211.165 kb on - strand, within HP15_3060 at 3211.205 kb on - strand, within HP15_3060 at 3211.245 kb on - strand, within HP15_3060 at 3211.245 kb on - strand, within HP15_3060 at 3211.419 kb on - strand at 3211.419 kb on - strand at 3211.483 kb on - strand at 3211.529 kb on + strand at 3211.537 kb on - strand at 3211.542 kb on - strand at 3211.723 kb on + strand, within HP15_3061 at 3211.723 kb on + strand, within HP15_3061 at 3211.730 kb on + strand, within HP15_3061 at 3211.731 kb on - strand, within HP15_3061 at 3211.774 kb on + strand, within HP15_3061 at 3212.051 kb on - strand, within HP15_3061 at 3212.102 kb on - strand, within HP15_3061 at 3212.190 kb on + strand, within HP15_3061 at 3212.425 kb on + strand, within HP15_3061 at 3212.443 kb on - strand, within HP15_3061 at 3212.464 kb on - strand, within HP15_3061 at 3212.596 kb on - strand, within HP15_3061 at 3212.630 kb on + strand, within HP15_3061 at 3212.633 kb on - strand, within HP15_3061 at 3212.671 kb on + strand, within HP15_3061 at 3212.713 kb on - strand, within HP15_3061 at 3212.959 kb on + strand, within HP15_3061 at 3213.024 kb on + strand, within HP15_3061 at 3213.118 kb on + strand, within HP15_3061 at 3213.127 kb on + strand, within HP15_3061 at 3213.140 kb on - strand, within HP15_3061 at 3213.238 kb on + strand at 3213.244 kb on + strand at 3213.506 kb on - strand at 3213.722 kb on - strand, within HP15_3062 at 3213.722 kb on - strand, within HP15_3062 at 3213.832 kb on + strand, within HP15_3062 at 3213.867 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.881 kb on + strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3213.889 kb on - strand, within HP15_3062 at 3214.033 kb on + strand, within HP15_3062 at 3214.098 kb on + strand, within HP15_3062 at 3214.106 kb on - strand, within HP15_3062 at 3214.178 kb on + strand at 3214.207 kb on + strand at 3214.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 3,210,820 - -0.4 3,210,824 + -0.5 3,211,059 - HP15_3060 0.24 -0.5 3,211,165 - HP15_3060 0.47 -0.6 3,211,165 - HP15_3060 0.47 -0.9 3,211,205 - HP15_3060 0.55 -1.6 3,211,245 - HP15_3060 0.64 -0.7 3,211,245 - HP15_3060 0.64 +0.0 3,211,419 - -2.2 3,211,419 - -1.5 3,211,483 - -0.5 3,211,529 + -1.0 3,211,537 - -0.2 3,211,542 - -0.3 3,211,723 + HP15_3061 0.13 +1.0 3,211,723 + HP15_3061 0.13 +0.7 3,211,730 + HP15_3061 0.13 -1.6 3,211,731 - HP15_3061 0.13 -1.1 3,211,774 + HP15_3061 0.15 -0.6 3,212,051 - HP15_3061 0.30 -1.3 3,212,102 - HP15_3061 0.33 -1.4 3,212,190 + HP15_3061 0.37 -1.5 3,212,425 + HP15_3061 0.50 +0.2 3,212,443 - HP15_3061 0.51 +0.1 3,212,464 - HP15_3061 0.52 -1.2 3,212,596 - HP15_3061 0.59 -1.3 3,212,630 + HP15_3061 0.61 -2.4 3,212,633 - HP15_3061 0.61 -0.6 3,212,671 + HP15_3061 0.63 +0.9 3,212,713 - HP15_3061 0.65 -0.8 3,212,959 + HP15_3061 0.78 +0.9 3,213,024 + HP15_3061 0.82 -0.9 3,213,118 + HP15_3061 0.87 -1.2 3,213,127 + HP15_3061 0.87 +0.1 3,213,140 - HP15_3061 0.88 +0.2 3,213,238 + -0.4 3,213,244 + +2.2 3,213,506 - -0.4 3,213,722 - HP15_3062 0.35 -0.5 3,213,722 - HP15_3062 0.35 -0.3 3,213,832 + HP15_3062 0.50 +0.8 3,213,867 + HP15_3062 0.54 -2.5 3,213,881 + HP15_3062 0.56 +1.3 3,213,881 + HP15_3062 0.56 +0.4 3,213,881 + HP15_3062 0.56 +0.3 3,213,889 - HP15_3062 0.57 -0.9 3,213,889 - HP15_3062 0.57 +1.9 3,213,889 - HP15_3062 0.57 +1.8 3,213,889 - HP15_3062 0.57 -0.8 3,214,033 + HP15_3062 0.76 -0.5 3,214,098 + HP15_3062 0.85 +0.6 3,214,106 - HP15_3062 0.86 -0.3 3,214,178 + +0.0 3,214,207 + +0.3 3,214,217 + +0.5
Or see this region's nucleotide sequence