Strain Fitness in Marinobacter adhaerens HP15 around HP15_3060

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3058 and HP15_3059 are separated by 9 nucleotidesHP15_3059 and HP15_3060 are separated by 238 nucleotidesHP15_3060 and HP15_3061 are separated by 74 nucleotides HP15_3058: HP15_3058 - leucine/isoleucine/valine transporter ATP-binding subunit, at 3,209,243 to 3,209,998 _3058 HP15_3059: HP15_3059 - high-affinity branched-chain amino acid ABC transporter, ATP-binding protein, at 3,210,008 to 3,210,709 _3059 HP15_3060: HP15_3060 - conserved hypothetical protein, secreted, at 3,210,948 to 3,211,412 _3060 HP15_3061: HP15_3061 - conserved hypothetical protein, secreted, at 3,211,487 to 3,213,367 _3061 Position (kb) 3210 3211 3212Strain fitness (log2 ratio) -2 -1 0 1at 3209.992 kb on + strandat 3210.000 kb on - strandat 3210.007 kb on - strandat 3210.025 kb on + strandat 3210.053 kb on + strandat 3210.136 kb on + strand, within HP15_3059at 3210.218 kb on + strand, within HP15_3059at 3210.266 kb on - strand, within HP15_3059at 3210.380 kb on - strand, within HP15_3059at 3210.459 kb on + strand, within HP15_3059at 3210.820 kb on - strandat 3210.824 kb on + strandat 3211.059 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.165 kb on - strand, within HP15_3060at 3211.205 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.245 kb on - strand, within HP15_3060at 3211.419 kb on - strandat 3211.419 kb on - strandat 3211.483 kb on - strandat 3211.529 kb on + strandat 3211.537 kb on - strandat 3211.542 kb on - strandat 3211.723 kb on + strand, within HP15_3061at 3211.723 kb on + strand, within HP15_3061at 3211.730 kb on + strand, within HP15_3061at 3211.731 kb on - strand, within HP15_3061at 3211.774 kb on + strand, within HP15_3061at 3212.051 kb on - strand, within HP15_3061at 3212.102 kb on - strand, within HP15_3061at 3212.190 kb on + strand, within HP15_3061

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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3,209,992 + -1.0
3,210,000 - -0.0
3,210,007 - -0.5
3,210,025 + -2.6
3,210,053 + -0.1
3,210,136 + HP15_3059 0.18 -0.2
3,210,218 + HP15_3059 0.30 -0.2
3,210,266 - HP15_3059 0.37 +0.4
3,210,380 - HP15_3059 0.53 +0.3
3,210,459 + HP15_3059 0.64 +0.7
3,210,820 - -0.4
3,210,824 + -0.5
3,211,059 - HP15_3060 0.24 -0.5
3,211,165 - HP15_3060 0.47 -0.6
3,211,165 - HP15_3060 0.47 -0.9
3,211,205 - HP15_3060 0.55 -1.6
3,211,245 - HP15_3060 0.64 -0.7
3,211,245 - HP15_3060 0.64 +0.0
3,211,419 - -2.2
3,211,419 - -1.5
3,211,483 - -0.5
3,211,529 + -1.0
3,211,537 - -0.2
3,211,542 - -0.3
3,211,723 + HP15_3061 0.13 +1.0
3,211,723 + HP15_3061 0.13 +0.7
3,211,730 + HP15_3061 0.13 -1.6
3,211,731 - HP15_3061 0.13 -1.1
3,211,774 + HP15_3061 0.15 -0.6
3,212,051 - HP15_3061 0.30 -1.3
3,212,102 - HP15_3061 0.33 -1.4
3,212,190 + HP15_3061 0.37 -1.5

Or see this region's nucleotide sequence