Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2950 and HP15_2951 are separated by 28 nucleotides HP15_2951 and HP15_2952 are separated by 177 nucleotides HP15_2952 and HP15_2953 are separated by 60 nucleotides
HP15_2950: HP15_2950 - transcriptional regulator, BadM/Rrf2 family, at 3,093,381 to 3,093,818
_2950
HP15_2951: HP15_2951 - membrane protein containing DUF454, at 3,093,847 to 3,094,215
_2951
HP15_2952: HP15_2952 - molybdenum cofactor biosynthesis protein A, at 3,094,393 to 3,095,385
_2952
HP15_2953: HP15_2953 - oxygen-independent coproporphyrinogen III oxidase, at 3,095,446 to 3,096,864
_2953
Position (kb)
3094
3095
3096 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3093.415 kb on - strand at 3093.420 kb on - strand at 3093.566 kb on - strand, within HP15_2950 at 3093.597 kb on + strand, within HP15_2950 at 3093.618 kb on + strand, within HP15_2950 at 3093.623 kb on + strand, within HP15_2950 at 3093.626 kb on - strand, within HP15_2950 at 3093.626 kb on - strand, within HP15_2950 at 3093.756 kb on + strand, within HP15_2950 at 3093.756 kb on + strand, within HP15_2950 at 3093.756 kb on + strand, within HP15_2950 at 3093.764 kb on - strand, within HP15_2950 at 3093.960 kb on + strand, within HP15_2951 at 3094.015 kb on + strand, within HP15_2951 at 3094.028 kb on - strand, within HP15_2951 at 3094.050 kb on + strand, within HP15_2951 at 3094.222 kb on + strand at 3094.230 kb on - strand at 3094.292 kb on + strand at 3094.300 kb on - strand at 3094.300 kb on - strand at 3094.482 kb on + strand at 3094.485 kb on + strand at 3094.505 kb on - strand, within HP15_2952 at 3094.533 kb on - strand, within HP15_2952 at 3094.628 kb on + strand, within HP15_2952 at 3094.638 kb on + strand, within HP15_2952 at 3094.753 kb on + strand, within HP15_2952 at 3094.816 kb on + strand, within HP15_2952 at 3094.834 kb on - strand, within HP15_2952 at 3094.845 kb on - strand, within HP15_2952 at 3094.874 kb on - strand, within HP15_2952 at 3094.917 kb on + strand, within HP15_2952 at 3095.008 kb on - strand, within HP15_2952 at 3095.042 kb on - strand, within HP15_2952 at 3095.175 kb on + strand, within HP15_2952 at 3095.280 kb on + strand, within HP15_2952 at 3095.287 kb on + strand at 3095.398 kb on + strand at 3095.408 kb on + strand at 3095.416 kb on - strand at 3095.435 kb on - strand at 3095.489 kb on - strand at 3095.489 kb on - strand at 3095.783 kb on - strand, within HP15_2953 at 3095.879 kb on - strand, within HP15_2953 at 3095.952 kb on + strand, within HP15_2953 at 3096.034 kb on + strand, within HP15_2953 at 3096.039 kb on + strand, within HP15_2953 at 3096.047 kb on + strand, within HP15_2953 at 3096.094 kb on + strand, within HP15_2953 at 3096.147 kb on + strand, within HP15_2953 at 3096.251 kb on + strand, within HP15_2953 at 3096.314 kb on - strand, within HP15_2953 at 3096.314 kb on - strand, within HP15_2953 at 3096.345 kb on - strand, within HP15_2953 at 3096.359 kb on - strand, within HP15_2953 at 3096.383 kb on - strand, within HP15_2953
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 3,093,415 - +0.2 3,093,420 - +0.3 3,093,566 - HP15_2950 0.42 +1.6 3,093,597 + HP15_2950 0.49 +1.2 3,093,618 + HP15_2950 0.54 +1.0 3,093,623 + HP15_2950 0.55 +0.6 3,093,626 - HP15_2950 0.56 +0.6 3,093,626 - HP15_2950 0.56 +1.3 3,093,756 + HP15_2950 0.86 -0.1 3,093,756 + HP15_2950 0.86 -0.3 3,093,756 + HP15_2950 0.86 -0.3 3,093,764 - HP15_2950 0.87 -0.5 3,093,960 + HP15_2951 0.31 -0.7 3,094,015 + HP15_2951 0.46 -1.1 3,094,028 - HP15_2951 0.49 +0.8 3,094,050 + HP15_2951 0.55 -2.2 3,094,222 + -0.1 3,094,230 - +0.2 3,094,292 + +0.4 3,094,300 - -0.3 3,094,300 - +0.6 3,094,482 + +0.5 3,094,485 + -0.2 3,094,505 - HP15_2952 0.11 +0.4 3,094,533 - HP15_2952 0.14 +0.8 3,094,628 + HP15_2952 0.24 +0.9 3,094,638 + HP15_2952 0.25 +0.2 3,094,753 + HP15_2952 0.36 -0.4 3,094,816 + HP15_2952 0.43 -0.7 3,094,834 - HP15_2952 0.44 -0.2 3,094,845 - HP15_2952 0.46 +0.2 3,094,874 - HP15_2952 0.48 -0.1 3,094,917 + HP15_2952 0.53 +1.6 3,095,008 - HP15_2952 0.62 +0.1 3,095,042 - HP15_2952 0.65 +0.2 3,095,175 + HP15_2952 0.79 +1.7 3,095,280 + HP15_2952 0.89 +0.8 3,095,287 + +0.3 3,095,398 + +0.3 3,095,408 + -0.8 3,095,416 - +0.6 3,095,435 - +0.9 3,095,489 - -0.6 3,095,489 - +0.7 3,095,783 - HP15_2953 0.24 -0.4 3,095,879 - HP15_2953 0.31 -0.3 3,095,952 + HP15_2953 0.36 -1.4 3,096,034 + HP15_2953 0.41 -0.4 3,096,039 + HP15_2953 0.42 -0.3 3,096,047 + HP15_2953 0.42 +2.1 3,096,094 + HP15_2953 0.46 +0.6 3,096,147 + HP15_2953 0.49 -0.5 3,096,251 + HP15_2953 0.57 -0.5 3,096,314 - HP15_2953 0.61 +0.8 3,096,314 - HP15_2953 0.61 +0.4 3,096,345 - HP15_2953 0.63 +0.3 3,096,359 - HP15_2953 0.64 +0.3 3,096,383 - HP15_2953 0.66 -0.5
Or see this region's nucleotide sequence