Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03010

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02990 and PGA1_c03000 are separated by 97 nucleotidesPGA1_c03000 and PGA1_c03010 are separated by 278 nucleotidesPGA1_c03010 and PGA1_c03020 overlap by 1 nucleotides PGA1_c02990: PGA1_c02990 - hypothetical protein, at 288,303 to 288,557 _c02990 PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128 _c03000 PGA1_c03010: PGA1_c03010 - glycerol-3-phosphate acyltransferase PlsY, at 289,407 to 290,012 _c03010 PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322 _c03020 Position (kb) 289 290 291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 288.454 kb on + strand, within PGA1_c02990at 288.454 kb on + strand, within PGA1_c02990at 288.460 kb on + strand, within PGA1_c02990at 288.465 kb on + strand, within PGA1_c02990at 288.480 kb on - strand, within PGA1_c02990at 288.487 kb on + strand, within PGA1_c02990at 288.495 kb on - strand, within PGA1_c02990at 288.526 kb on - strand, within PGA1_c02990at 288.554 kb on + strandat 288.554 kb on + strandat 288.589 kb on - strandat 288.596 kb on - strandat 288.596 kb on - strandat 288.646 kb on + strandat 288.653 kb on + strandat 288.677 kb on - strandat 288.693 kb on + strandat 288.747 kb on - strand, within PGA1_c03000at 288.758 kb on - strand, within PGA1_c03000at 288.768 kb on + strand, within PGA1_c03000at 288.768 kb on + strand, within PGA1_c03000at 288.768 kb on + strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.776 kb on - strand, within PGA1_c03000at 288.831 kb on - strand, within PGA1_c03000at 288.898 kb on - strand, within PGA1_c03000at 288.961 kb on + strand, within PGA1_c03000at 288.976 kb on - strand, within PGA1_c03000at 289.005 kb on + strand, within PGA1_c03000at 289.005 kb on + strand, within PGA1_c03000at 289.013 kb on - strand, within PGA1_c03000at 289.014 kb on - strand, within PGA1_c03000at 289.036 kb on - strand, within PGA1_c03000at 289.065 kb on + strand, within PGA1_c03000at 289.065 kb on + strand, within PGA1_c03000at 289.070 kb on + strand, within PGA1_c03000at 289.073 kb on - strand, within PGA1_c03000at 289.073 kb on - strand, within PGA1_c03000at 289.073 kb on - strand, within PGA1_c03000at 289.088 kb on - strandat 289.097 kb on + strandat 289.130 kb on + strandat 289.131 kb on + strandat 289.138 kb on - strandat 289.139 kb on - strandat 289.158 kb on - strandat 289.169 kb on + strandat 289.169 kb on + strandat 289.194 kb on - strandat 289.233 kb on - strandat 289.243 kb on - strandat 289.278 kb on + strandat 289.333 kb on - strandat 289.352 kb on - strandat 289.413 kb on - strandat 290.017 kb on - strandat 290.065 kb on - strandat 290.135 kb on + strandat 290.135 kb on + strandat 290.145 kb on + strand, within PGA1_c03020at 290.180 kb on + strand, within PGA1_c03020at 290.193 kb on - strand, within PGA1_c03020at 290.198 kb on - strand, within PGA1_c03020at 290.306 kb on - strand, within PGA1_c03020at 290.336 kb on + strand, within PGA1_c03020at 290.379 kb on - strand, within PGA1_c03020at 290.409 kb on + strand, within PGA1_c03020at 290.417 kb on - strand, within PGA1_c03020at 290.417 kb on - strand, within PGA1_c03020at 290.437 kb on - strand, within PGA1_c03020at 290.452 kb on + strand, within PGA1_c03020at 290.467 kb on + strand, within PGA1_c03020at 290.486 kb on + strand, within PGA1_c03020at 290.572 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.583 kb on + strand, within PGA1_c03020at 290.591 kb on - strand, within PGA1_c03020at 290.734 kb on + strand, within PGA1_c03020at 290.908 kb on - strand, within PGA1_c03020at 290.924 kb on - strand, within PGA1_c03020at 291.003 kb on + strand, within PGA1_c03020

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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288,454 + PGA1_c02990 0.59 -0.5
288,454 + PGA1_c02990 0.59 -0.7
288,460 + PGA1_c02990 0.62 +0.1
288,465 + PGA1_c02990 0.64 -2.4
288,480 - PGA1_c02990 0.69 -1.2
288,487 + PGA1_c02990 0.72 -1.1
288,495 - PGA1_c02990 0.75 -1.0
288,526 - PGA1_c02990 0.87 -1.7
288,554 + +0.1
288,554 + +1.6
288,589 - -0.6
288,596 - +0.3
288,596 - +0.6
288,646 + +2.0
288,653 + -1.4
288,677 - +0.2
288,693 + -0.3
288,747 - PGA1_c03000 0.19 +2.1
288,758 - PGA1_c03000 0.22 -1.4
288,768 + PGA1_c03000 0.24 +0.0
288,768 + PGA1_c03000 0.24 +0.9
288,768 + PGA1_c03000 0.24 -0.9
288,776 - PGA1_c03000 0.26 +0.1
288,776 - PGA1_c03000 0.26 +1.3
288,776 - PGA1_c03000 0.26 -1.5
288,776 - PGA1_c03000 0.26 +0.8
288,776 - PGA1_c03000 0.26 -1.2
288,776 - PGA1_c03000 0.26 +0.2
288,831 - PGA1_c03000 0.37 -0.5
288,898 - PGA1_c03000 0.51 -0.1
288,961 + PGA1_c03000 0.65 -2.1
288,976 - PGA1_c03000 0.68 +2.3
289,005 + PGA1_c03000 0.74 +0.8
289,005 + PGA1_c03000 0.74 -0.6
289,013 - PGA1_c03000 0.76 -0.8
289,014 - PGA1_c03000 0.76 +1.1
289,036 - PGA1_c03000 0.80 -1.2
289,065 + PGA1_c03000 0.86 +0.9
289,065 + PGA1_c03000 0.86 -1.5
289,070 + PGA1_c03000 0.88 -1.7
289,073 - PGA1_c03000 0.88 +1.6
289,073 - PGA1_c03000 0.88 +0.0
289,073 - PGA1_c03000 0.88 +0.7
289,088 - -0.1
289,097 + +0.0
289,130 + +1.1
289,131 + -0.2
289,138 - -1.1
289,139 - -0.8
289,158 - -0.1
289,169 + -0.8
289,169 + -0.0
289,194 - -0.6
289,233 - +1.5
289,243 - +0.3
289,278 + -0.2
289,333 - -1.1
289,352 - -0.1
289,413 - -2.1
290,017 - -0.8
290,065 - -3.8
290,135 + -2.4
290,135 + -0.7
290,145 + PGA1_c03020 0.10 -0.7
290,180 + PGA1_c03020 0.13 -0.5
290,193 - PGA1_c03020 0.14 -1.5
290,198 - PGA1_c03020 0.14 -2.7
290,306 - PGA1_c03020 0.22 -1.4
290,336 + PGA1_c03020 0.25 +0.3
290,379 - PGA1_c03020 0.28 +0.3
290,409 + PGA1_c03020 0.30 -2.9
290,417 - PGA1_c03020 0.31 -1.2
290,417 - PGA1_c03020 0.31 -2.0
290,437 - PGA1_c03020 0.32 -3.0
290,452 + PGA1_c03020 0.34 -2.0
290,467 + PGA1_c03020 0.35 -4.1
290,486 + PGA1_c03020 0.36 -3.2
290,572 + PGA1_c03020 0.43 -2.1
290,583 + PGA1_c03020 0.44 -2.8
290,583 + PGA1_c03020 0.44 -2.1
290,583 + PGA1_c03020 0.44 -0.7
290,591 - PGA1_c03020 0.44 -2.7
290,734 + PGA1_c03020 0.55 -1.0
290,908 - PGA1_c03020 0.68 -2.4
290,924 - PGA1_c03020 0.70 -1.7
291,003 + PGA1_c03020 0.76 -1.8

Or see this region's nucleotide sequence