Strain Fitness in Marinobacter adhaerens HP15 around HP15_2779

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2777 and HP15_2778 are separated by 24 nucleotidesHP15_2778 and HP15_2779 are separated by 40 nucleotidesHP15_2779 and HP15_2780 are separated by 97 nucleotidesHP15_2780 and HP15_2781 are separated by 76 nucleotidesHP15_2781 and HP15_2782 are separated by 15 nucleotides HP15_2777: HP15_2777 - penicillin-binding protein 1B, at 2,929,495 to 2,929,707 _2777 HP15_2778: HP15_2778 - transcriptional regulator, at 2,929,732 to 2,930,400 _2778 HP15_2779: HP15_2779 - GTP cyclohydrolase II, at 2,930,441 to 2,930,920 _2779 HP15_2780: HP15_2780 - monofunctional biosynthetic peptidoglycan transglycosylase, at 2,931,018 to 2,931,710 _2780 HP15_2781: HP15_2781 - hypothetical protein, at 2,931,787 to 2,931,900 _2781 HP15_2782: HP15_2782 - hypothetical protein, at 2,931,916 to 2,932,149 _2782 Position (kb) 2930 2931Strain fitness (log2 ratio) -1 0 1 2at 2929.477 kb on + strandat 2929.477 kb on + strandat 2929.477 kb on + strandat 2929.485 kb on - strandat 2929.485 kb on - strandat 2929.651 kb on - strand, within HP15_2777at 2929.743 kb on - strandat 2929.799 kb on + strand, within HP15_2778at 2929.871 kb on - strand, within HP15_2778at 2929.886 kb on - strand, within HP15_2778at 2929.903 kb on - strand, within HP15_2778at 2930.088 kb on - strand, within HP15_2778at 2930.115 kb on - strand, within HP15_2778at 2930.202 kb on + strand, within HP15_2778at 2930.208 kb on + strand, within HP15_2778at 2930.210 kb on - strand, within HP15_2778at 2930.265 kb on + strand, within HP15_2778at 2930.267 kb on - strand, within HP15_2778at 2930.305 kb on + strand, within HP15_2778at 2930.402 kb on - strandat 2930.413 kb on + strandat 2930.494 kb on - strand, within HP15_2779at 2930.588 kb on + strand, within HP15_2779at 2930.603 kb on - strand, within HP15_2779at 2930.652 kb on + strand, within HP15_2779at 2930.662 kb on + strand, within HP15_2779at 2930.687 kb on + strand, within HP15_2779at 2930.778 kb on - strand, within HP15_2779at 2930.779 kb on + strand, within HP15_2779at 2930.791 kb on + strand, within HP15_2779at 2930.799 kb on - strand, within HP15_2779at 2930.836 kb on + strand, within HP15_2779at 2930.844 kb on - strand, within HP15_2779at 2930.892 kb on - strandat 2930.986 kb on + strandat 2931.055 kb on - strandat 2931.079 kb on + strandat 2931.081 kb on + strandat 2931.162 kb on - strand, within HP15_2780at 2931.162 kb on - strand, within HP15_2780at 2931.357 kb on + strand, within HP15_2780at 2931.516 kb on + strand, within HP15_2780at 2931.721 kb on - strandat 2931.785 kb on + strandat 2931.814 kb on - strand, within HP15_2781at 2931.897 kb on + strandat 2931.910 kb on - strandat 2931.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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2,929,477 + -0.6
2,929,477 + -0.8
2,929,477 + +1.9
2,929,485 - +0.5
2,929,485 - -0.6
2,929,651 - HP15_2777 0.73 +0.1
2,929,743 - +0.6
2,929,799 + HP15_2778 0.10 +0.3
2,929,871 - HP15_2778 0.21 +0.9
2,929,886 - HP15_2778 0.23 +0.2
2,929,903 - HP15_2778 0.26 +0.5
2,930,088 - HP15_2778 0.53 +0.1
2,930,115 - HP15_2778 0.57 +0.8
2,930,202 + HP15_2778 0.70 +1.6
2,930,208 + HP15_2778 0.71 -0.6
2,930,210 - HP15_2778 0.71 -0.0
2,930,265 + HP15_2778 0.80 +0.2
2,930,267 - HP15_2778 0.80 +0.2
2,930,305 + HP15_2778 0.86 -0.6
2,930,402 - -0.7
2,930,413 + +0.2
2,930,494 - HP15_2779 0.11 -1.0
2,930,588 + HP15_2779 0.31 +0.8
2,930,603 - HP15_2779 0.34 +0.6
2,930,652 + HP15_2779 0.44 +0.5
2,930,662 + HP15_2779 0.46 +0.3
2,930,687 + HP15_2779 0.51 -0.2
2,930,778 - HP15_2779 0.70 +0.0
2,930,779 + HP15_2779 0.70 +0.3
2,930,791 + HP15_2779 0.73 -0.6
2,930,799 - HP15_2779 0.75 -1.1
2,930,836 + HP15_2779 0.82 -0.1
2,930,844 - HP15_2779 0.84 +2.1
2,930,892 - +2.6
2,930,986 + -0.5
2,931,055 - -0.0
2,931,079 + +0.1
2,931,081 + -1.3
2,931,162 - HP15_2780 0.21 -0.9
2,931,162 - HP15_2780 0.21 -1.6
2,931,357 + HP15_2780 0.49 -0.9
2,931,516 + HP15_2780 0.72 -0.6
2,931,721 - +1.2
2,931,785 + +0.1
2,931,814 - HP15_2781 0.24 +0.4
2,931,897 + +1.6
2,931,910 - +0.8
2,931,910 - +0.1

Or see this region's nucleotide sequence