Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2678 and HP15_2679 are separated by 179 nucleotides HP15_2679 and HP15_2680 are separated by 23 nucleotides HP15_2680 and HP15_2681 are separated by 68 nucleotides HP15_2681 and HP15_2682 are separated by 51 nucleotides
HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356
_2678
HP15_2679: HP15_2679 - transglycosylase SLT domain protein, at 2,827,536 to 2,828,237
_2679
HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193
_2680
HP15_2681: HP15_2681 - hypothetical protein, at 2,829,262 to 2,830,077
_2681
HP15_2682: HP15_2682 - TRAP dicarboxylate transporter- DctP subunit, at 2,830,129 to 2,831,094
_2682
Position (kb)
2828
2829
2830 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2827.470 kb on - strand at 2827.544 kb on + strand at 2827.554 kb on + strand at 2827.677 kb on - strand, within HP15_2679 at 2827.748 kb on - strand, within HP15_2679 at 2827.750 kb on + strand, within HP15_2679 at 2827.780 kb on - strand, within HP15_2679 at 2827.784 kb on - strand, within HP15_2679 at 2827.839 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on - strand, within HP15_2679 at 2827.908 kb on - strand, within HP15_2679 at 2827.962 kb on + strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.176 kb on - strand at 2828.372 kb on - strand, within HP15_2680 at 2828.434 kb on - strand, within HP15_2680 at 2828.449 kb on - strand, within HP15_2680 at 2828.455 kb on + strand, within HP15_2680 at 2828.463 kb on - strand, within HP15_2680 at 2828.515 kb on - strand, within HP15_2680 at 2828.517 kb on - strand, within HP15_2680 at 2828.524 kb on - strand, within HP15_2680 at 2828.566 kb on + strand, within HP15_2680 at 2828.689 kb on - strand, within HP15_2680 at 2828.972 kb on + strand, within HP15_2680 at 2829.022 kb on + strand, within HP15_2680 at 2829.067 kb on + strand, within HP15_2680 at 2829.111 kb on + strand at 2829.309 kb on + strand at 2829.485 kb on - strand, within HP15_2681 at 2829.485 kb on - strand, within HP15_2681 at 2829.592 kb on - strand, within HP15_2681 at 2829.597 kb on - strand, within HP15_2681 at 2829.623 kb on + strand, within HP15_2681 at 2829.631 kb on - strand, within HP15_2681 at 2829.631 kb on - strand, within HP15_2681 at 2829.663 kb on + strand, within HP15_2681 at 2829.748 kb on + strand, within HP15_2681 at 2829.794 kb on - strand, within HP15_2681 at 2829.926 kb on + strand, within HP15_2681 at 2829.951 kb on + strand, within HP15_2681 at 2829.959 kb on - strand, within HP15_2681 at 2829.959 kb on - strand, within HP15_2681 at 2829.971 kb on + strand, within HP15_2681 at 2830.024 kb on - strand at 2830.024 kb on - strand at 2830.176 kb on + strand at 2830.184 kb on - strand at 2830.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 2,827,470 - +0.4 2,827,544 + +0.7 2,827,554 + -0.9 2,827,677 - HP15_2679 0.20 -0.7 2,827,748 - HP15_2679 0.30 +0.2 2,827,750 + HP15_2679 0.30 +0.3 2,827,780 - HP15_2679 0.35 +0.3 2,827,784 - HP15_2679 0.35 -0.7 2,827,839 + HP15_2679 0.43 -0.3 2,827,889 + HP15_2679 0.50 +1.8 2,827,889 + HP15_2679 0.50 -0.3 2,827,889 - HP15_2679 0.50 -2.1 2,827,908 - HP15_2679 0.53 -0.8 2,827,962 + HP15_2679 0.61 +0.9 2,828,098 - HP15_2679 0.80 +0.7 2,828,098 - HP15_2679 0.80 -1.6 2,828,176 - -2.3 2,828,372 - HP15_2680 0.12 +0.9 2,828,434 - HP15_2680 0.19 -0.7 2,828,449 - HP15_2680 0.20 +0.4 2,828,455 + HP15_2680 0.21 -0.5 2,828,463 - HP15_2680 0.22 -0.6 2,828,515 - HP15_2680 0.27 +0.9 2,828,517 - HP15_2680 0.27 -0.4 2,828,524 - HP15_2680 0.28 +1.3 2,828,566 + HP15_2680 0.33 +0.9 2,828,689 - HP15_2680 0.46 +2.0 2,828,972 + HP15_2680 0.76 +1.0 2,829,022 + HP15_2680 0.82 -0.5 2,829,067 + HP15_2680 0.86 +1.1 2,829,111 + -0.6 2,829,309 + +0.4 2,829,485 - HP15_2681 0.27 -0.2 2,829,485 - HP15_2681 0.27 +0.6 2,829,592 - HP15_2681 0.40 -0.0 2,829,597 - HP15_2681 0.41 +0.3 2,829,623 + HP15_2681 0.44 -0.7 2,829,631 - HP15_2681 0.45 -0.2 2,829,631 - HP15_2681 0.45 +0.3 2,829,663 + HP15_2681 0.49 +0.9 2,829,748 + HP15_2681 0.60 +0.4 2,829,794 - HP15_2681 0.65 +0.3 2,829,926 + HP15_2681 0.81 -0.6 2,829,951 + HP15_2681 0.84 -0.5 2,829,959 - HP15_2681 0.85 +0.4 2,829,959 - HP15_2681 0.85 -0.1 2,829,971 + HP15_2681 0.87 -0.2 2,830,024 - +1.6 2,830,024 - +1.9 2,830,176 + -0.0 2,830,184 - -0.0 2,830,186 - +1.9
Or see this region's nucleotide sequence