Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2542 and HP15_2543 are separated by 5 nucleotides HP15_2543 and HP15_2544 are separated by 9 nucleotides
HP15_2542: HP15_2542 - methylcrotonoyl-coenzyme A carboxylase 1 (alpha), at 2,686,950 to 2,688,920
_2542
HP15_2543: HP15_2543 - short-chain dehydrogenase/reductase SDR, at 2,688,926 to 2,689,744
_2543
HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635
_2544
Position (kb)
2688
2689
2690 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2687.937 kb on - strand, within HP15_2542 at 2687.937 kb on - strand, within HP15_2542 at 2687.950 kb on + strand, within HP15_2542 at 2687.963 kb on + strand, within HP15_2542 at 2687.971 kb on - strand, within HP15_2542 at 2687.997 kb on + strand, within HP15_2542 at 2688.005 kb on - strand, within HP15_2542 at 2688.042 kb on + strand, within HP15_2542 at 2688.176 kb on - strand, within HP15_2542 at 2688.181 kb on - strand, within HP15_2542 at 2688.258 kb on + strand, within HP15_2542 at 2688.276 kb on - strand, within HP15_2542 at 2688.551 kb on - strand, within HP15_2542 at 2688.553 kb on + strand, within HP15_2542 at 2688.627 kb on - strand, within HP15_2542 at 2688.740 kb on - strand at 2688.799 kb on + strand at 2688.802 kb on - strand at 2688.905 kb on + strand at 2689.155 kb on + strand, within HP15_2543 at 2689.196 kb on + strand, within HP15_2543 at 2689.204 kb on - strand, within HP15_2543 at 2689.240 kb on + strand, within HP15_2543 at 2689.248 kb on - strand, within HP15_2543 at 2689.289 kb on + strand, within HP15_2543 at 2689.289 kb on + strand, within HP15_2543 at 2689.315 kb on + strand, within HP15_2543 at 2689.315 kb on + strand, within HP15_2543 at 2689.318 kb on - strand, within HP15_2543 at 2689.320 kb on + strand, within HP15_2543 at 2689.323 kb on - strand, within HP15_2543 at 2689.394 kb on - strand, within HP15_2543 at 2689.527 kb on + strand, within HP15_2543 at 2689.535 kb on - strand, within HP15_2543 at 2689.552 kb on - strand, within HP15_2543 at 2689.639 kb on - strand, within HP15_2543 at 2689.811 kb on + strand at 2690.061 kb on + strand, within HP15_2544 at 2690.167 kb on + strand, within HP15_2544 at 2690.175 kb on - strand, within HP15_2544 at 2690.175 kb on - strand, within HP15_2544 at 2690.175 kb on - strand, within HP15_2544 at 2690.213 kb on - strand, within HP15_2544 at 2690.296 kb on + strand, within HP15_2544 at 2690.323 kb on + strand, within HP15_2544 at 2690.340 kb on + strand, within HP15_2544 at 2690.359 kb on - strand, within HP15_2544 at 2690.383 kb on + strand, within HP15_2544 at 2690.383 kb on + strand, within HP15_2544 at 2690.383 kb on + strand, within HP15_2544 at 2690.414 kb on - strand, within HP15_2544 at 2690.414 kb on - strand, within HP15_2544 at 2690.421 kb on - strand, within HP15_2544 at 2690.447 kb on + strand, within HP15_2544 at 2690.479 kb on + strand, within HP15_2544 at 2690.487 kb on - strand, within HP15_2544 at 2690.534 kb on + strand, within HP15_2544 at 2690.594 kb on - strand, within HP15_2544 at 2690.606 kb on + strand, within HP15_2544 at 2690.611 kb on + strand, within HP15_2544 at 2690.630 kb on - strand, within HP15_2544 at 2690.654 kb on - strand, within HP15_2544
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 2,687,937 - HP15_2542 0.50 -0.0 2,687,937 - HP15_2542 0.50 -0.3 2,687,950 + HP15_2542 0.51 +1.1 2,687,963 + HP15_2542 0.51 -0.1 2,687,971 - HP15_2542 0.52 -0.4 2,687,997 + HP15_2542 0.53 -0.5 2,688,005 - HP15_2542 0.54 -0.1 2,688,042 + HP15_2542 0.55 +1.0 2,688,176 - HP15_2542 0.62 +0.6 2,688,181 - HP15_2542 0.62 +0.6 2,688,258 + HP15_2542 0.66 -0.4 2,688,276 - HP15_2542 0.67 -0.2 2,688,551 - HP15_2542 0.81 +0.5 2,688,553 + HP15_2542 0.81 -1.4 2,688,627 - HP15_2542 0.85 -0.8 2,688,740 - +0.7 2,688,799 + -0.7 2,688,802 - +3.2 2,688,905 + -0.9 2,689,155 + HP15_2543 0.28 -0.5 2,689,196 + HP15_2543 0.33 -0.0 2,689,204 - HP15_2543 0.34 +1.1 2,689,240 + HP15_2543 0.38 -0.4 2,689,248 - HP15_2543 0.39 -0.4 2,689,289 + HP15_2543 0.44 -0.6 2,689,289 + HP15_2543 0.44 -0.6 2,689,315 + HP15_2543 0.47 +0.2 2,689,315 + HP15_2543 0.47 -0.3 2,689,318 - HP15_2543 0.48 -1.2 2,689,320 + HP15_2543 0.48 +0.4 2,689,323 - HP15_2543 0.48 -0.8 2,689,394 - HP15_2543 0.57 +0.1 2,689,527 + HP15_2543 0.73 -1.1 2,689,535 - HP15_2543 0.74 -0.8 2,689,552 - HP15_2543 0.76 -0.9 2,689,639 - HP15_2543 0.87 -0.6 2,689,811 + +0.4 2,690,061 + HP15_2544 0.16 -0.1 2,690,167 + HP15_2544 0.22 -0.4 2,690,175 - HP15_2544 0.22 +0.2 2,690,175 - HP15_2544 0.22 +0.4 2,690,175 - HP15_2544 0.22 -0.2 2,690,213 - HP15_2544 0.24 +0.8 2,690,296 + HP15_2544 0.29 +0.2 2,690,323 + HP15_2544 0.30 -1.1 2,690,340 + HP15_2544 0.31 -1.1 2,690,359 - HP15_2544 0.32 +0.3 2,690,383 + HP15_2544 0.33 +0.1 2,690,383 + HP15_2544 0.33 +0.8 2,690,383 + HP15_2544 0.33 +0.7 2,690,414 - HP15_2544 0.35 -0.2 2,690,414 - HP15_2544 0.35 +1.9 2,690,421 - HP15_2544 0.35 +0.5 2,690,447 + HP15_2544 0.37 +2.0 2,690,479 + HP15_2544 0.39 +0.6 2,690,487 - HP15_2544 0.39 -0.5 2,690,534 + HP15_2544 0.41 +0.6 2,690,594 - HP15_2544 0.45 +0.2 2,690,606 + HP15_2544 0.45 +0.2 2,690,611 + HP15_2544 0.46 -0.7 2,690,630 - HP15_2544 0.47 +0.1 2,690,654 - HP15_2544 0.48 -1.5
Or see this region's nucleotide sequence