Strain Fitness in Marinobacter adhaerens HP15 around HP15_2542

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2539 and HP15_2541 are separated by 22 nucleotidesHP15_2541 and HP15_2542 are separated by 155 nucleotidesHP15_2542 and HP15_2543 are separated by 5 nucleotidesHP15_2543 and HP15_2544 are separated by 9 nucleotides HP15_2539: HP15_2539 - acyl-CoA dehydrogenase domain protein, at 2,684,790 to 2,685,950 _2539 HP15_2541: HP15_2541 - enoyl-CoA hydratase/isomerase family protein, at 2,685,973 to 2,686,794 _2541 HP15_2542: HP15_2542 - methylcrotonoyl-coenzyme A carboxylase 1 (alpha), at 2,686,950 to 2,688,920 _2542 HP15_2543: HP15_2543 - short-chain dehydrogenase/reductase SDR, at 2,688,926 to 2,689,744 _2543 HP15_2544: HP15_2544 - acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 2,689,754 to 2,691,635 _2544 Position (kb) 2686 2687 2688 2689Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2685.967 kb on - strandat 2685.978 kb on - strandat 2686.099 kb on + strand, within HP15_2541at 2686.164 kb on + strand, within HP15_2541at 2686.164 kb on + strand, within HP15_2541at 2686.224 kb on + strand, within HP15_2541at 2686.251 kb on + strand, within HP15_2541at 2686.281 kb on + strand, within HP15_2541at 2686.300 kb on - strand, within HP15_2541at 2686.327 kb on + strand, within HP15_2541at 2686.335 kb on - strand, within HP15_2541at 2686.335 kb on - strand, within HP15_2541at 2686.491 kb on + strand, within HP15_2541at 2686.650 kb on - strand, within HP15_2541at 2686.652 kb on + strand, within HP15_2541at 2686.683 kb on + strand, within HP15_2541at 2686.749 kb on - strandat 2686.904 kb on + strandat 2686.912 kb on - strandat 2687.023 kb on - strandat 2687.109 kb on + strandat 2687.135 kb on + strandat 2687.478 kb on - strand, within HP15_2542at 2687.478 kb on - strand, within HP15_2542at 2687.497 kb on - strand, within HP15_2542at 2687.514 kb on + strand, within HP15_2542at 2687.535 kb on + strand, within HP15_2542at 2687.630 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.635 kb on + strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.643 kb on - strand, within HP15_2542at 2687.648 kb on - strand, within HP15_2542at 2687.684 kb on - strand, within HP15_2542at 2687.708 kb on + strand, within HP15_2542at 2687.744 kb on - strand, within HP15_2542at 2687.796 kb on + strand, within HP15_2542at 2687.914 kb on + strand, within HP15_2542at 2687.937 kb on - strand, within HP15_2542at 2687.937 kb on - strand, within HP15_2542at 2687.950 kb on + strand, within HP15_2542at 2687.963 kb on + strand, within HP15_2542at 2687.971 kb on - strand, within HP15_2542at 2687.997 kb on + strand, within HP15_2542at 2688.005 kb on - strand, within HP15_2542at 2688.042 kb on + strand, within HP15_2542at 2688.176 kb on - strand, within HP15_2542at 2688.181 kb on - strand, within HP15_2542at 2688.258 kb on + strand, within HP15_2542at 2688.276 kb on - strand, within HP15_2542at 2688.551 kb on - strand, within HP15_2542at 2688.553 kb on + strand, within HP15_2542at 2688.627 kb on - strand, within HP15_2542at 2688.740 kb on - strandat 2688.799 kb on + strandat 2688.802 kb on - strandat 2688.905 kb on + strandat 2689.155 kb on + strand, within HP15_2543at 2689.196 kb on + strand, within HP15_2543at 2689.204 kb on - strand, within HP15_2543at 2689.240 kb on + strand, within HP15_2543at 2689.248 kb on - strand, within HP15_2543at 2689.289 kb on + strand, within HP15_2543at 2689.289 kb on + strand, within HP15_2543at 2689.315 kb on + strand, within HP15_2543at 2689.315 kb on + strand, within HP15_2543at 2689.318 kb on - strand, within HP15_2543at 2689.320 kb on + strand, within HP15_2543at 2689.323 kb on - strand, within HP15_2543at 2689.394 kb on - strand, within HP15_2543at 2689.527 kb on + strand, within HP15_2543at 2689.535 kb on - strand, within HP15_2543at 2689.552 kb on - strand, within HP15_2543at 2689.639 kb on - strand, within HP15_2543at 2689.811 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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2,685,967 - -0.2
2,685,978 - +1.9
2,686,099 + HP15_2541 0.15 -0.4
2,686,164 + HP15_2541 0.23 +1.3
2,686,164 + HP15_2541 0.23 +0.3
2,686,224 + HP15_2541 0.31 +0.2
2,686,251 + HP15_2541 0.34 -0.3
2,686,281 + HP15_2541 0.37 +1.2
2,686,300 - HP15_2541 0.40 -1.3
2,686,327 + HP15_2541 0.43 -0.4
2,686,335 - HP15_2541 0.44 -0.1
2,686,335 - HP15_2541 0.44 -0.8
2,686,491 + HP15_2541 0.63 -0.3
2,686,650 - HP15_2541 0.82 +1.3
2,686,652 + HP15_2541 0.83 +0.2
2,686,683 + HP15_2541 0.86 -0.6
2,686,749 - -1.6
2,686,904 + -1.0
2,686,912 - -0.7
2,687,023 - -0.2
2,687,109 + -0.1
2,687,135 + +0.1
2,687,478 - HP15_2542 0.27 -0.1
2,687,478 - HP15_2542 0.27 -0.5
2,687,497 - HP15_2542 0.28 +0.3
2,687,514 + HP15_2542 0.29 +0.1
2,687,535 + HP15_2542 0.30 +2.5
2,687,630 + HP15_2542 0.35 +0.3
2,687,635 + HP15_2542 0.35 +0.6
2,687,635 + HP15_2542 0.35 +1.5
2,687,635 + HP15_2542 0.35 +0.0
2,687,635 + HP15_2542 0.35 +0.5
2,687,635 + HP15_2542 0.35 -2.6
2,687,635 + HP15_2542 0.35 +0.4
2,687,635 + HP15_2542 0.35 -0.2
2,687,635 + HP15_2542 0.35 +0.7
2,687,635 + HP15_2542 0.35 -0.8
2,687,643 - HP15_2542 0.35 +0.3
2,687,643 - HP15_2542 0.35 -0.4
2,687,643 - HP15_2542 0.35 +0.4
2,687,643 - HP15_2542 0.35 +1.1
2,687,643 - HP15_2542 0.35 -0.1
2,687,643 - HP15_2542 0.35 -0.1
2,687,643 - HP15_2542 0.35 +0.0
2,687,643 - HP15_2542 0.35 +0.4
2,687,648 - HP15_2542 0.35 +0.6
2,687,684 - HP15_2542 0.37 +0.6
2,687,708 + HP15_2542 0.38 +1.4
2,687,744 - HP15_2542 0.40 -0.6
2,687,796 + HP15_2542 0.43 +2.0
2,687,914 + HP15_2542 0.49 +1.6
2,687,937 - HP15_2542 0.50 -0.0
2,687,937 - HP15_2542 0.50 -0.3
2,687,950 + HP15_2542 0.51 +1.1
2,687,963 + HP15_2542 0.51 -0.1
2,687,971 - HP15_2542 0.52 -0.4
2,687,997 + HP15_2542 0.53 -0.5
2,688,005 - HP15_2542 0.54 -0.1
2,688,042 + HP15_2542 0.55 +1.0
2,688,176 - HP15_2542 0.62 +0.6
2,688,181 - HP15_2542 0.62 +0.6
2,688,258 + HP15_2542 0.66 -0.4
2,688,276 - HP15_2542 0.67 -0.2
2,688,551 - HP15_2542 0.81 +0.5
2,688,553 + HP15_2542 0.81 -1.4
2,688,627 - HP15_2542 0.85 -0.8
2,688,740 - +0.7
2,688,799 + -0.7
2,688,802 - +3.2
2,688,905 + -0.9
2,689,155 + HP15_2543 0.28 -0.5
2,689,196 + HP15_2543 0.33 -0.0
2,689,204 - HP15_2543 0.34 +1.1
2,689,240 + HP15_2543 0.38 -0.4
2,689,248 - HP15_2543 0.39 -0.4
2,689,289 + HP15_2543 0.44 -0.6
2,689,289 + HP15_2543 0.44 -0.6
2,689,315 + HP15_2543 0.47 +0.2
2,689,315 + HP15_2543 0.47 -0.3
2,689,318 - HP15_2543 0.48 -1.2
2,689,320 + HP15_2543 0.48 +0.4
2,689,323 - HP15_2543 0.48 -0.8
2,689,394 - HP15_2543 0.57 +0.1
2,689,527 + HP15_2543 0.73 -1.1
2,689,535 - HP15_2543 0.74 -0.8
2,689,552 - HP15_2543 0.76 -0.9
2,689,639 - HP15_2543 0.87 -0.6
2,689,811 + +0.4

Or see this region's nucleotide sequence