Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c25980

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,705,033	-				-0.7
2,705,153	-		PGA1_c25970	0.22	-2.8
2,705,173	+		PGA1_c25970	0.24	-2.5
2,705,173	+		PGA1_c25970	0.24	-0.3
2,705,191	-		PGA1_c25970	0.26	-0.5
2,705,211	-		PGA1_c25970	0.28	+1.1
2,705,245	-		PGA1_c25970	0.32	-0.5
2,705,265	+		PGA1_c25970	0.35	-0.7
2,705,287	+		PGA1_c25970	0.37	-0.6
2,705,451	-		PGA1_c25970	0.56	-0.9
2,705,512	-		PGA1_c25970	0.63	-0.4
2,705,528	+		PGA1_c25970	0.65	-1.2
2,705,528	+		PGA1_c25970	0.65	-0.5
2,705,529	+		PGA1_c25970	0.65	-0.3
2,705,612	-		PGA1_c25970	0.75	-1.0
2,705,767	+				-0.5
2,705,767	+				-2.5
2,705,797	+				+0.1
2,705,797	+				-0.4
2,705,804	-				-0.1
2,705,805	-				-1.1
2,705,805	-				+1.1
2,705,805	-				-2.0
2,705,805	-				-1.2
2,705,874	-				-1.9
2,705,874	-				-0.6
2,705,904	-				-1.5
2,705,904	-				+0.6
2,705,904	-				-2.2
2,705,906	-				-0.9
2,705,974	+				-1.4
2,705,974	+				-2.0
2,705,974	+				-0.5
2,705,974	+				+0.5
2,705,974	+				-2.2
2,705,982	-				-2.2
2,705,982	-				-1.6
2,705,982	-				-0.6
2,706,053	-				+0.6
2,706,060	-				-1.2
2,706,064	+				-1.5
2,706,087	-				-1.1
2,706,096	+				-0.9
2,706,116	+				-2.0
2,706,117	-				-0.5
2,706,122	-				-1.2
2,706,133	+				-2.4
2,706,143	+				-2.8
2,706,143	+				-0.2
2,706,213	+		PGA1_c25980	0.11	-0.2
2,706,214	+		PGA1_c25980	0.11	-0.9
2,706,222	+		PGA1_c25980	0.11	-1.5
2,706,222	-		PGA1_c25980	0.11	-0.3
2,706,230	-		PGA1_c25980	0.12	-0.9
2,706,235	+		PGA1_c25980	0.12	-1.5
2,706,243	-		PGA1_c25980	0.12	-1.5
2,706,243	-		PGA1_c25980	0.12	-0.1
2,706,243	-		PGA1_c25980	0.12	-1.0
2,706,262	-		PGA1_c25980	0.13	-0.5
2,706,325	+		PGA1_c25980	0.16	-1.2
2,706,325	+		PGA1_c25980	0.16	+0.2
2,706,325	+		PGA1_c25980	0.16	+0.4
2,706,333	-		PGA1_c25980	0.17	-2.9
2,706,333	-		PGA1_c25980	0.17	-0.5
2,706,333	-		PGA1_c25980	0.17	-2.3
2,706,359	+		PGA1_c25980	0.18	-1.2
2,706,375	+		PGA1_c25980	0.19	+0.3
2,706,377	-		PGA1_c25980	0.19	+0.7
2,706,382	+		PGA1_c25980	0.19	+0.7
2,706,390	-		PGA1_c25980	0.19	-0.7
2,706,393	+		PGA1_c25980	0.20	-0.4
2,706,486	+		PGA1_c25980	0.24	-0.7
2,706,541	+		PGA1_c25980	0.27	-0.2
2,706,608	-		PGA1_c25980	0.30	+0.3
2,706,613	+		PGA1_c25980	0.30	+2.7
2,706,628	-		PGA1_c25980	0.31	-2.6
2,706,643	+		PGA1_c25980	0.31	+0.9
2,706,648	-		PGA1_c25980	0.32	-0.1
2,706,696	+		PGA1_c25980	0.34	+0.5
2,706,721	+		PGA1_c25980	0.35	-1.9
2,706,730	-		PGA1_c25980	0.36	-1.6
2,706,867	+		PGA1_c25980	0.42	+0.2
2,706,874	-		PGA1_c25980	0.42	-0.5
2,706,874	-		PGA1_c25980	0.42	-1.3
2,706,891	+		PGA1_c25980	0.43	+2.3
2,706,899	+		PGA1_c25980	0.44	+0.1
2,706,945	+		PGA1_c25980	0.46	-1.1
2,706,960	+		PGA1_c25980	0.47	-1.5
2,706,963	-		PGA1_c25980	0.47	+0.6
2,707,074	+		PGA1_c25980	0.52	-2.0
2,707,090	+		PGA1_c25980	0.53	-0.9
2,707,119	+		PGA1_c25980	0.54	-0.5
2,707,128	+		PGA1_c25980	0.55	-1.4
2,707,156	+		PGA1_c25980	0.56	-0.7
2,707,157	+		PGA1_c25980	0.56	-1.5
2,707,206	+		PGA1_c25980	0.58	-0.3
2,707,206	+		PGA1_c25980	0.58	-1.2
2,707,206	+		PGA1_c25980	0.58	-0.2
2,707,206	+		PGA1_c25980	0.58	-0.2
2,707,206	+		PGA1_c25980	0.58	-2.9
2,707,206	+		PGA1_c25980	0.58	+0.1
2,707,214	-		PGA1_c25980	0.59	+1.7
2,707,214	-		PGA1_c25980	0.59	+0.9
2,707,238	+		PGA1_c25980	0.60	-0.2
2,707,246	+		PGA1_c25980	0.60	-0.5
2,707,246	-		PGA1_c25980	0.60	-1.6
2,707,363	+		PGA1_c25980	0.66	+0.9
2,707,418	+		PGA1_c25980	0.68	-0.5
2,707,418	+		PGA1_c25980	0.68	+0.3
2,707,426	-		PGA1_c25980	0.69	+1.1
2,707,454	+		PGA1_c25980	0.70	+0.6
2,707,487	-		PGA1_c25980	0.72	-1.7
2,707,552	-		PGA1_c25980	0.75	+0.6
2,707,589	+		PGA1_c25980	0.76	+0.7
2,707,608	-		PGA1_c25980	0.77	-0.2
2,707,609	-		PGA1_c25980	0.77	-0.0
2,707,609	-		PGA1_c25980	0.77	-2.0
2,707,670	-		PGA1_c25980	0.80	+0.5
2,707,670	-		PGA1_c25980	0.80	-0.7
2,707,717	-		PGA1_c25980	0.83	+1.6
2,707,738	-		PGA1_c25980	0.84	-2.5
2,707,748	-		PGA1_c25980	0.84	+1.5
2,707,749	+		PGA1_c25980	0.84	-0.5
2,707,786	+		PGA1_c25980	0.86	-2.5
2,707,786	+		PGA1_c25980	0.86	-1.3
2,707,977	-				-0.9
2,708,024	-				-0.3
2,708,036	+				-0.3
2,708,036	+				+1.6
2,708,038	+				-1.0
2,708,038	+				-0.0
2,708,039	-				-1.8
2,708,055	-				+0.1
2,708,090	-				+0.6
2,708,131	+				-2.0
2,708,140	+				-2.0
2,708,221	+				-0.7
2,708,239	-				-0.0
2,708,262	+				-0.3
2,708,276	+				+1.7
2,708,355	+				+0.7
2,708,405	-				-1.3
2,708,428	-				+0.1
2,708,505	-				-2.0
2,708,572	+				-0.2
2,708,572	+				+0.7
2,708,580	-				-0.0
2,708,580	-				+1.1
2,708,580	-				+0.9
2,708,580	-				-0.9
2,708,580	-				-1.7
2,708,654	+		PGA1_c25990	0.30	+0.9
2,708,662	-		PGA1_c25990	0.34	-0.0
2,708,663	+		PGA1_c25990	0.34	-0.6
2,708,802	+				+1.0
2,708,803	+				-1.5
2,708,854	-				-1.3
2,708,924	+		PGA1_c26000	0.11	-0.9
2,708,974	+		PGA1_c26000	0.16	-1.1
2,709,025	+		PGA1_c26000	0.22	+0.4
2,709,034	+		PGA1_c26000	0.23	-0.5
2,709,037	-		PGA1_c26000	0.23	+0.1
2,709,038	-		PGA1_c26000	0.23	-2.0
2,709,038	-		PGA1_c26000	0.23	-1.0
2,709,039	+		PGA1_c26000	0.24	+2.1