Strain Fitness in Marinobacter adhaerens HP15 around HP15_2380

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2378 and HP15_2379 are separated by 36 nucleotidesHP15_2379 and HP15_2380 are separated by 142 nucleotidesHP15_2380 and HP15_2381 are separated by 43 nucleotides HP15_2378: HP15_2378 - sensory box/GGDEF family protein, at 2,507,014 to 2,507,967 _2378 HP15_2379: HP15_2379 - transcriptional regulator MvaT, P16 subunit, at 2,508,004 to 2,508,372 _2379 HP15_2380: HP15_2380 - metallo-beta-lactamase family protein, at 2,508,515 to 2,509,906 _2380 HP15_2381: HP15_2381 - UDP-glucose 6-dehydrogenase, at 2,509,950 to 2,511,143 _2381 Position (kb) 2508 2509 2510Strain fitness (log2 ratio) -1 0 1 2at 2507.571 kb on + strand, within HP15_2378at 2507.573 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.795 kb on + strand, within HP15_2378at 2507.796 kb on - strand, within HP15_2378at 2507.803 kb on - strand, within HP15_2378at 2507.803 kb on - strand, within HP15_2378at 2507.820 kb on - strand, within HP15_2378at 2507.830 kb on - strand, within HP15_2378at 2507.862 kb on - strand, within HP15_2378at 2507.959 kb on - strandat 2507.963 kb on - strandat 2507.986 kb on + strandat 2508.000 kb on + strandat 2508.005 kb on - strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.019 kb on + strandat 2508.086 kb on + strand, within HP15_2379at 2508.673 kb on + strand, within HP15_2380at 2508.800 kb on - strand, within HP15_2380at 2508.904 kb on + strand, within HP15_2380at 2508.943 kb on - strand, within HP15_2380at 2509.007 kb on - strand, within HP15_2380at 2509.009 kb on + strand, within HP15_2380at 2509.119 kb on - strand, within HP15_2380at 2509.185 kb on + strand, within HP15_2380at 2509.187 kb on + strand, within HP15_2380at 2509.195 kb on - strand, within HP15_2380at 2509.207 kb on + strand, within HP15_2380at 2509.220 kb on + strand, within HP15_2380at 2509.231 kb on + strand, within HP15_2380at 2509.327 kb on - strand, within HP15_2380at 2509.396 kb on - strand, within HP15_2380at 2509.432 kb on + strand, within HP15_2380at 2509.432 kb on + strand, within HP15_2380at 2509.440 kb on - strand, within HP15_2380at 2509.446 kb on + strand, within HP15_2380at 2509.454 kb on - strand, within HP15_2380at 2509.470 kb on + strand, within HP15_2380at 2509.504 kb on - strand, within HP15_2380at 2509.591 kb on - strand, within HP15_2380at 2509.596 kb on + strand, within HP15_2380at 2509.649 kb on + strand, within HP15_2380at 2509.657 kb on - strand, within HP15_2380at 2509.788 kb on + strandat 2509.878 kb on - strandat 2509.975 kb on + strandat 2509.975 kb on + strandat 2509.985 kb on + strandat 2509.985 kb on + strandat 2510.007 kb on - strandat 2510.070 kb on - strand, within HP15_2381at 2510.166 kb on + strand, within HP15_2381at 2510.174 kb on - strand, within HP15_2381at 2510.174 kb on - strand, within HP15_2381at 2510.287 kb on + strand, within HP15_2381at 2510.287 kb on + strand, within HP15_2381at 2510.287 kb on + strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.295 kb on - strand, within HP15_2381at 2510.300 kb on + strand, within HP15_2381at 2510.307 kb on - strand, within HP15_2381at 2510.366 kb on - strand, within HP15_2381at 2510.378 kb on + strand, within HP15_2381at 2510.378 kb on + strand, within HP15_2381at 2510.445 kb on - strand, within HP15_2381at 2510.573 kb on + strand, within HP15_2381at 2510.573 kb on + strand, within HP15_2381at 2510.581 kb on - strand, within HP15_2381at 2510.590 kb on + strand, within HP15_2381at 2510.600 kb on - strand, within HP15_2381at 2510.665 kb on + strand, within HP15_2381at 2510.721 kb on - strand, within HP15_2381at 2510.783 kb on + strand, within HP15_2381at 2510.826 kb on + strand, within HP15_2381at 2510.827 kb on - strand, within HP15_2381

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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2,507,571 + HP15_2378 0.58 +0.6
2,507,573 + HP15_2378 0.59 -1.1
2,507,795 + HP15_2378 0.82 +1.5
2,507,795 + HP15_2378 0.82 +0.5
2,507,795 + HP15_2378 0.82 +0.9
2,507,796 - HP15_2378 0.82 -0.7
2,507,803 - HP15_2378 0.83 +2.3
2,507,803 - HP15_2378 0.83 -0.4
2,507,820 - HP15_2378 0.84 +0.2
2,507,830 - HP15_2378 0.86 +0.0
2,507,862 - HP15_2378 0.89 -0.2
2,507,959 - +0.1
2,507,963 - +0.1
2,507,986 + +0.2
2,508,000 + -1.7
2,508,005 - -0.8
2,508,019 + -0.1
2,508,019 + +1.2
2,508,019 + +0.5
2,508,019 + -1.0
2,508,019 + +1.2
2,508,086 + HP15_2379 0.22 -0.9
2,508,673 + HP15_2380 0.11 +0.9
2,508,800 - HP15_2380 0.20 -0.3
2,508,904 + HP15_2380 0.28 +0.0
2,508,943 - HP15_2380 0.31 -0.2
2,509,007 - HP15_2380 0.35 -0.4
2,509,009 + HP15_2380 0.35 +0.5
2,509,119 - HP15_2380 0.43 -1.6
2,509,185 + HP15_2380 0.48 -1.3
2,509,187 + HP15_2380 0.48 +1.0
2,509,195 - HP15_2380 0.49 +0.1
2,509,207 + HP15_2380 0.50 -0.1
2,509,220 + HP15_2380 0.51 +0.5
2,509,231 + HP15_2380 0.51 +2.0
2,509,327 - HP15_2380 0.58 +1.1
2,509,396 - HP15_2380 0.63 +0.7
2,509,432 + HP15_2380 0.66 +0.7
2,509,432 + HP15_2380 0.66 +0.3
2,509,440 - HP15_2380 0.66 +0.1
2,509,446 + HP15_2380 0.67 +0.6
2,509,454 - HP15_2380 0.67 -0.4
2,509,470 + HP15_2380 0.69 +0.3
2,509,504 - HP15_2380 0.71 -0.7
2,509,591 - HP15_2380 0.77 -0.5
2,509,596 + HP15_2380 0.78 +1.8
2,509,649 + HP15_2380 0.81 -0.7
2,509,657 - HP15_2380 0.82 +0.1
2,509,788 + -0.0
2,509,878 - -0.6
2,509,975 + +0.1
2,509,975 + -0.3
2,509,985 + +0.5
2,509,985 + -0.2
2,510,007 - +0.5
2,510,070 - HP15_2381 0.10 +0.4
2,510,166 + HP15_2381 0.18 +1.7
2,510,174 - HP15_2381 0.19 +0.0
2,510,174 - HP15_2381 0.19 -0.2
2,510,287 + HP15_2381 0.28 +0.0
2,510,287 + HP15_2381 0.28 -0.5
2,510,287 + HP15_2381 0.28 +0.1
2,510,295 - HP15_2381 0.29 -0.5
2,510,295 - HP15_2381 0.29 -0.4
2,510,295 - HP15_2381 0.29 -0.5
2,510,295 - HP15_2381 0.29 -0.1
2,510,300 + HP15_2381 0.29 -1.2
2,510,307 - HP15_2381 0.30 -1.4
2,510,366 - HP15_2381 0.35 -0.1
2,510,378 + HP15_2381 0.36 +0.6
2,510,378 + HP15_2381 0.36 +2.2
2,510,445 - HP15_2381 0.41 +0.5
2,510,573 + HP15_2381 0.52 -0.9
2,510,573 + HP15_2381 0.52 -0.7
2,510,581 - HP15_2381 0.53 +0.2
2,510,590 + HP15_2381 0.54 -0.7
2,510,600 - HP15_2381 0.54 -0.2
2,510,665 + HP15_2381 0.60 +1.2
2,510,721 - HP15_2381 0.65 +0.5
2,510,783 + HP15_2381 0.70 -0.7
2,510,826 + HP15_2381 0.73 +0.4
2,510,827 - HP15_2381 0.73 +0.5

Or see this region's nucleotide sequence