Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23390

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,429,091	+				+0.4
2,429,099	-				-1.0
2,429,101	-				-0.3
2,429,119	-				-0.8
2,429,143	-				-0.5
2,429,191	+				+1.0
2,429,199	-				-1.0
2,429,199	-				-1.3
2,429,199	-				+1.6
2,429,206	-				+0.4
2,429,285	+		PGA1_c23380	0.15	-0.4
2,429,334	+		PGA1_c23380	0.21	+1.7
2,429,334	+		PGA1_c23380	0.21	-0.3
2,429,342	-		PGA1_c23380	0.21	+1.0
2,429,388	-		PGA1_c23380	0.26	-0.6
2,429,390	+		PGA1_c23380	0.27	+0.7
2,429,398	-		PGA1_c23380	0.28	-1.0
2,429,411	-		PGA1_c23380	0.29	-2.7
2,429,476	-		PGA1_c23380	0.36	+0.2
2,429,546	+		PGA1_c23380	0.43	-0.2
2,429,548	-		PGA1_c23380	0.44	-2.2
2,429,586	+		PGA1_c23380	0.48	-0.6
2,429,597	+		PGA1_c23380	0.49	-0.0
2,429,605	-		PGA1_c23380	0.50	-1.5
2,429,642	+		PGA1_c23380	0.54	-0.5
2,429,650	-		PGA1_c23380	0.55	-0.8
2,429,725	+		PGA1_c23380	0.63	-0.9
2,429,733	-		PGA1_c23380	0.64	-0.2
2,429,754	+		PGA1_c23380	0.66	-1.0
2,429,762	-		PGA1_c23380	0.67	+0.7
2,429,806	+		PGA1_c23380	0.72	+0.6
2,429,935	-		PGA1_c23380	0.85	-1.0
2,429,935	-		PGA1_c23380	0.85	-0.2
2,429,962	-		PGA1_c23380	0.88	-0.8
2,429,967	-		PGA1_c23380	0.89	-0.3
2,430,106	+				+2.0
2,430,114	+				-1.0
2,430,117	+				-1.3
2,430,117	+				-0.0
2,430,125	-				-1.3
2,430,143	+				-0.5
2,430,144	+				-1.0
2,430,154	+				+1.6
2,430,154	-				-2.2
2,430,259	+				-0.1
2,430,302	-				-0.0
2,430,326	+				+0.4
2,430,341	-		PGA1_c23390	0.10	-0.9
2,430,417	+		PGA1_c23390	0.14	-0.0
2,430,426	+		PGA1_c23390	0.14	+1.8
2,430,543	+		PGA1_c23390	0.19	-0.6
2,430,543	+		PGA1_c23390	0.19	+0.9
2,430,551	-		PGA1_c23390	0.19	-2.2
2,430,551	-		PGA1_c23390	0.19	+0.6
2,430,551	-		PGA1_c23390	0.19	-0.6
2,430,573	+		PGA1_c23390	0.20	-0.6
2,430,581	+		PGA1_c23390	0.20	-0.4
2,430,615	+		PGA1_c23390	0.22	-0.4
2,430,667	+		PGA1_c23390	0.24	-0.1
2,430,682	+		PGA1_c23390	0.25	-0.7
2,430,690	+		PGA1_c23390	0.25	-1.1
2,430,698	-		PGA1_c23390	0.25	-1.2
2,430,746	+		PGA1_c23390	0.27	-1.5
2,430,746	+		PGA1_c23390	0.27	-1.8
2,430,746	+		PGA1_c23390	0.27	-1.8
2,430,754	-		PGA1_c23390	0.28	+1.2
2,430,754	-		PGA1_c23390	0.28	-1.0
2,430,754	-		PGA1_c23390	0.28	-2.2
2,430,754	-		PGA1_c23390	0.28	+1.4
2,430,754	-		PGA1_c23390	0.28	+0.2
2,430,754	-		PGA1_c23390	0.28	-0.3
2,430,784	-		PGA1_c23390	0.29	-0.6
2,430,785	-		PGA1_c23390	0.29	+0.3
2,430,808	-		PGA1_c23390	0.30	+0.0
2,430,835	-		PGA1_c23390	0.31	-0.2
2,430,865	-		PGA1_c23390	0.32	+0.9
2,430,891	+		PGA1_c23390	0.33	-0.3
2,430,899	-		PGA1_c23390	0.33	+1.0
2,430,922	+		PGA1_c23390	0.34	+1.5
2,430,947	+		PGA1_c23390	0.35	-0.2
2,430,947	+		PGA1_c23390	0.35	-0.7
2,430,952	-		PGA1_c23390	0.36	-0.2
2,430,955	-		PGA1_c23390	0.36	-0.4
2,430,979	+		PGA1_c23390	0.37	-1.8
2,430,996	+		PGA1_c23390	0.38	-0.3
2,431,004	-		PGA1_c23390	0.38	-0.9
2,431,004	-		PGA1_c23390	0.38	+1.7
2,431,004	-		PGA1_c23390	0.38	+1.4
2,431,016	+		PGA1_c23390	0.38	-1.2
2,431,017	-		PGA1_c23390	0.38	-0.4
2,431,064	+		PGA1_c23390	0.40	-2.4
2,431,064	+		PGA1_c23390	0.40	-1.2
2,431,064	+		PGA1_c23390	0.40	+1.5
2,431,064	+		PGA1_c23390	0.40	-2.3
2,431,064	+		PGA1_c23390	0.40	+0.4
2,431,072	-		PGA1_c23390	0.41	-1.9
2,431,072	-		PGA1_c23390	0.41	-2.5
2,431,072	-		PGA1_c23390	0.41	+0.3
2,431,082	-		PGA1_c23390	0.41	-0.5
2,431,084	+		PGA1_c23390	0.41	-1.0
2,431,147	+		PGA1_c23390	0.44	-0.6
2,431,198	+		PGA1_c23390	0.46	-0.8
2,431,218	-		PGA1_c23390	0.47	-0.2
2,431,220	+		PGA1_c23390	0.47	+1.3
2,431,220	+		PGA1_c23390	0.47	-0.9
2,431,220	+		PGA1_c23390	0.47	-1.3
2,431,228	-		PGA1_c23390	0.47	-1.0
2,431,290	-		PGA1_c23390	0.50	-0.3
2,431,314	-		PGA1_c23390	0.51	-2.0
2,431,319	-		PGA1_c23390	0.51	-0.5
2,431,396	-		PGA1_c23390	0.54	-0.4
2,431,441	-		PGA1_c23390	0.56	+0.1
2,431,441	-		PGA1_c23390	0.56	-2.2
2,431,496	+		PGA1_c23390	0.58	-0.3
2,431,496	+		PGA1_c23390	0.58	+0.1
2,431,496	+		PGA1_c23390	0.58	-1.6
2,431,496	+		PGA1_c23390	0.58	-2.7
2,431,496	+		PGA1_c23390	0.58	-1.4
2,431,504	-		PGA1_c23390	0.58	+1.2
2,431,504	-		PGA1_c23390	0.58	-1.0
2,431,560	-		PGA1_c23390	0.61	-0.2
2,431,560	-		PGA1_c23390	0.61	-0.1
2,431,588	+		PGA1_c23390	0.62	+1.0
2,431,591	-		PGA1_c23390	0.62	+0.6
2,431,627	-		PGA1_c23390	0.64	+0.6
2,431,742	-		PGA1_c23390	0.68	+0.2
2,431,794	-		PGA1_c23390	0.70	-2.0
2,431,794	-		PGA1_c23390	0.70	-0.2
2,431,856	-		PGA1_c23390	0.73	-1.6
2,431,914	+		PGA1_c23390	0.75	-1.0
2,431,934	+		PGA1_c23390	0.76	+0.3
2,431,965	+		PGA1_c23390	0.77	+0.2
2,431,990	-		PGA1_c23390	0.79	-0.8
2,432,012	-		PGA1_c23390	0.79	-0.6
2,432,014	-		PGA1_c23390	0.79	+0.2
2,432,095	+		PGA1_c23390	0.83	-0.0
2,432,095	+		PGA1_c23390	0.83	+0.7
2,432,103	-		PGA1_c23390	0.83	-0.4
2,432,123	-		PGA1_c23390	0.84	+0.9
2,432,154	-		PGA1_c23390	0.85	-0.4
2,432,168	+		PGA1_c23390	0.86	-1.7
2,432,168	+		PGA1_c23390	0.86	-1.0
2,432,176	-		PGA1_c23390	0.86	-1.1
2,432,176	-		PGA1_c23390	0.86	-0.3
2,432,176	-		PGA1_c23390	0.86	-0.0
2,432,176	-		PGA1_c23390	0.86	-0.3
2,432,181	+		PGA1_c23390	0.86	+0.2
2,432,188	-		PGA1_c23390	0.87	-1.9
2,432,203	+		PGA1_c23390	0.87	-0.2
2,432,211	-		PGA1_c23390	0.88	-0.7
2,432,282	-				+1.0
2,432,282	-				+0.6
2,432,337	-				-0.5
2,432,349	-				+0.1
2,432,401	-				+0.6
2,432,436	+				+2.6
2,432,436	+				+0.8
2,432,436	+				-0.6
2,432,441	+				+1.0
2,432,444	-				-0.6
2,432,444	-				+0.7
2,432,444	-				+1.1
2,432,444	-				-0.2
2,432,444	-				+0.4
2,432,449	-				+0.3
2,432,514	-				-0.6
2,432,531	-				+1.5
2,432,622	+				-0.0
2,432,622	+				+1.0
2,432,630	+				-1.3
2,432,630	-				-0.0
2,432,630	-				+0.6
2,432,641	-				-0.5
2,432,691	-				-1.4
2,432,814	+		PGA1_c23400	0.19	-0.0
2,432,814	+		PGA1_c23400	0.19	-0.1
2,432,821	+		PGA1_c23400	0.20	-1.9
2,432,836	-		PGA1_c23400	0.22	-0.1
2,432,980	-		PGA1_c23400	0.40	-0.0
2,432,998	+		PGA1_c23400	0.43	+2.7
2,433,005	+		PGA1_c23400	0.44	-0.7
2,433,030	+		PGA1_c23400	0.47	-1.0
2,433,030	+		PGA1_c23400	0.47	-0.9
2,433,038	-		PGA1_c23400	0.48	+0.2
2,433,038	-		PGA1_c23400	0.48	+0.2
2,433,040	+		PGA1_c23400	0.48	-0.9
2,433,040	+		PGA1_c23400	0.48	-0.2
2,433,083	-		PGA1_c23400	0.53	-1.3
2,433,104	+		PGA1_c23400	0.56	-2.3
2,433,104	+		PGA1_c23400	0.56	+0.1
2,433,112	-		PGA1_c23400	0.57	-0.5
2,433,146	+		PGA1_c23400	0.61	-0.0
2,433,161	-		PGA1_c23400	0.63	-1.4
2,433,181	+		PGA1_c23400	0.66	+0.3
2,433,181	-		PGA1_c23400	0.66	+0.6
2,433,183	-		PGA1_c23400	0.66	-0.7
2,433,183	-		PGA1_c23400	0.66	-0.1
2,433,192	+		PGA1_c23400	0.67	+1.0
2,433,192	+		PGA1_c23400	0.67	-1.0
2,433,267	-		PGA1_c23400	0.77	+2.0
2,433,303	+		PGA1_c23400	0.81	+0.4
2,433,303	+		PGA1_c23400	0.81	-0.7
2,433,311	-		PGA1_c23400	0.82	+1.7
2,433,332	+		PGA1_c23400	0.85	-0.8
2,433,347	-		PGA1_c23400	0.87	-0.0
2,433,347	-		PGA1_c23400	0.87	-1.2
2,433,361	+		PGA1_c23400	0.89	+0.4
2,433,495	+				+0.8