Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1939 and HP15_1940 overlap by 14 nucleotides HP15_1940 and HP15_1941 are separated by 30 nucleotides HP15_1941 and HP15_1942 are separated by 209 nucleotides HP15_1942 and HP15_1943 overlap by 11 nucleotides
HP15_1939: HP15_1939 - glycosyl transferase, group 1, at 2,058,085 to 2,060,025
_1939
HP15_1940: HP15_1940 - conserved hypothetical protein, at 2,060,012 to 2,060,410
_1940
HP15_1941: HP15_1941 - alcohol dehydrogenase zinc-binding domain protein, at 2,060,441 to 2,061,448
_1941
HP15_1942: HP15_1942 - CDP-alcohol phosphatidyltransferase-like protein, at 2,061,658 to 2,062,359
_1942
HP15_1943: HP15_1943 - lipid/polyisoprenoid-binding, YceI-like protein, at 2,062,349 to 2,062,963
_1943
Position (kb)
2060
2061
2062 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2059.524 kb on - strand, within HP15_1939 at 2059.545 kb on - strand, within HP15_1939 at 2059.684 kb on - strand, within HP15_1939 at 2059.918 kb on + strand at 2059.958 kb on + strand at 2060.089 kb on - strand, within HP15_1940 at 2060.099 kb on - strand, within HP15_1940 at 2060.274 kb on + strand, within HP15_1940 at 2060.459 kb on + strand at 2060.563 kb on - strand, within HP15_1941 at 2060.566 kb on + strand, within HP15_1941 at 2060.628 kb on - strand, within HP15_1941 at 2060.678 kb on + strand, within HP15_1941 at 2060.704 kb on - strand, within HP15_1941 at 2060.769 kb on + strand, within HP15_1941 at 2060.829 kb on - strand, within HP15_1941 at 2060.913 kb on - strand, within HP15_1941 at 2060.988 kb on + strand, within HP15_1941 at 2061.012 kb on + strand, within HP15_1941 at 2061.117 kb on - strand, within HP15_1941 at 2061.182 kb on + strand, within HP15_1941 at 2061.294 kb on + strand, within HP15_1941 at 2061.302 kb on - strand, within HP15_1941 at 2061.313 kb on - strand, within HP15_1941 at 2061.353 kb on - strand at 2061.360 kb on - strand at 2061.430 kb on + strand at 2061.430 kb on + strand at 2061.526 kb on + strand at 2061.568 kb on + strand at 2061.576 kb on - strand at 2061.662 kb on + strand at 2061.694 kb on - strand at 2061.708 kb on - strand at 2061.713 kb on - strand at 2061.713 kb on - strand at 2061.713 kb on - strand at 2061.730 kb on + strand, within HP15_1942 at 2061.733 kb on - strand, within HP15_1942 at 2061.782 kb on + strand, within HP15_1942 at 2061.782 kb on + strand, within HP15_1942 at 2061.801 kb on + strand, within HP15_1942 at 2061.852 kb on - strand, within HP15_1942 at 2061.857 kb on - strand, within HP15_1942 at 2061.903 kb on + strand, within HP15_1942 at 2061.914 kb on + strand, within HP15_1942 at 2062.077 kb on + strand, within HP15_1942 at 2062.096 kb on + strand, within HP15_1942 at 2062.211 kb on + strand, within HP15_1942 at 2062.211 kb on + strand, within HP15_1942 at 2062.217 kb on - strand, within HP15_1942 at 2062.322 kb on + strand at 2062.375 kb on - strand at 2062.421 kb on + strand, within HP15_1943
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 2,059,524 - HP15_1939 0.74 -0.5 2,059,545 - HP15_1939 0.75 +0.1 2,059,684 - HP15_1939 0.82 +0.6 2,059,918 + +0.3 2,059,958 + +1.3 2,060,089 - HP15_1940 0.19 +0.0 2,060,099 - HP15_1940 0.22 +0.1 2,060,274 + HP15_1940 0.66 -0.6 2,060,459 + -0.7 2,060,563 - HP15_1941 0.12 +0.3 2,060,566 + HP15_1941 0.12 +0.0 2,060,628 - HP15_1941 0.19 +1.2 2,060,678 + HP15_1941 0.24 -0.4 2,060,704 - HP15_1941 0.26 -0.4 2,060,769 + HP15_1941 0.33 +0.4 2,060,829 - HP15_1941 0.38 -0.1 2,060,913 - HP15_1941 0.47 +0.1 2,060,988 + HP15_1941 0.54 +1.0 2,061,012 + HP15_1941 0.57 -0.2 2,061,117 - HP15_1941 0.67 +0.6 2,061,182 + HP15_1941 0.74 +2.9 2,061,294 + HP15_1941 0.85 +0.5 2,061,302 - HP15_1941 0.85 +1.1 2,061,313 - HP15_1941 0.87 +0.7 2,061,353 - +0.6 2,061,360 - -0.1 2,061,430 + +0.7 2,061,430 + +1.5 2,061,526 + -0.1 2,061,568 + -0.4 2,061,576 - -0.4 2,061,662 + +0.4 2,061,694 - +0.5 2,061,708 - -0.1 2,061,713 - +1.4 2,061,713 - +0.3 2,061,713 - +0.5 2,061,730 + HP15_1942 0.10 -1.7 2,061,733 - HP15_1942 0.11 -0.6 2,061,782 + HP15_1942 0.18 +0.0 2,061,782 + HP15_1942 0.18 -0.5 2,061,801 + HP15_1942 0.20 +0.4 2,061,852 - HP15_1942 0.28 -0.2 2,061,857 - HP15_1942 0.28 -0.4 2,061,903 + HP15_1942 0.35 -0.6 2,061,914 + HP15_1942 0.36 -0.2 2,062,077 + HP15_1942 0.60 -0.3 2,062,096 + HP15_1942 0.62 +0.5 2,062,211 + HP15_1942 0.79 -0.1 2,062,211 + HP15_1942 0.79 +0.5 2,062,217 - HP15_1942 0.80 -0.6 2,062,322 + -0.2 2,062,375 - +0.2 2,062,421 + HP15_1943 0.12 -0.6
Or see this region's nucleotide sequence