Strain Fitness in Marinobacter adhaerens HP15 around HP15_1844

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1842 and HP15_1843 are separated by 13 nucleotidesHP15_1843 and HP15_1844 are separated by 193 nucleotidesHP15_1844 and HP15_1845 overlap by 8 nucleotides HP15_1842: HP15_1842 - hydrolase, alpha/beta fold family, at 1,941,714 to 1,942,664 _1842 HP15_1843: HP15_1843 - type IV pilus assembly PilZ, at 1,942,678 to 1,942,950 _1843 HP15_1844: HP15_1844 - DNA polymerase III, delta prime subunit, at 1,943,144 to 1,944,175 _1844 HP15_1845: HP15_1845 - transglutaminase domain protein, at 1,944,168 to 1,946,243 _1845 Position (kb) 1943 1944 1945Strain fitness (log2 ratio) -2 -1 0 1at 1942.171 kb on + strand, within HP15_1842at 1942.198 kb on - strand, within HP15_1842at 1942.267 kb on - strand, within HP15_1842at 1942.414 kb on + strand, within HP15_1842at 1942.423 kb on + strand, within HP15_1842at 1942.431 kb on - strand, within HP15_1842at 1942.468 kb on - strand, within HP15_1842at 1942.474 kb on - strand, within HP15_1842at 1942.609 kb on - strandat 1942.670 kb on - strandat 1942.727 kb on + strand, within HP15_1843at 1942.929 kb on - strandat 1942.963 kb on + strandat 1942.995 kb on + strandat 1943.001 kb on - strandat 1944.434 kb on + strand, within HP15_1845at 1944.698 kb on - strand, within HP15_1845at 1944.711 kb on - strand, within HP15_1845at 1944.724 kb on + strand, within HP15_1845at 1944.747 kb on + strand, within HP15_1845at 1944.755 kb on - strand, within HP15_1845at 1944.766 kb on - strand, within HP15_1845at 1944.766 kb on - strand, within HP15_1845at 1944.837 kb on + strand, within HP15_1845at 1944.840 kb on - strand, within HP15_1845at 1945.026 kb on + strand, within HP15_1845at 1945.077 kb on - strand, within HP15_1845at 1945.079 kb on + strand, within HP15_1845at 1945.087 kb on - strand, within HP15_1845

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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1,942,171 + HP15_1842 0.48 -1.5
1,942,198 - HP15_1842 0.51 -1.3
1,942,267 - HP15_1842 0.58 +0.1
1,942,414 + HP15_1842 0.74 -0.5
1,942,423 + HP15_1842 0.75 +1.0
1,942,431 - HP15_1842 0.75 +0.1
1,942,468 - HP15_1842 0.79 +0.4
1,942,474 - HP15_1842 0.80 +1.0
1,942,609 - -1.9
1,942,670 - +1.2
1,942,727 + HP15_1843 0.18 -1.1
1,942,929 - +1.1
1,942,963 + +0.4
1,942,995 + -0.1
1,943,001 - +0.2
1,944,434 + HP15_1845 0.13 -0.7
1,944,698 - HP15_1845 0.26 +1.4
1,944,711 - HP15_1845 0.26 -0.1
1,944,724 + HP15_1845 0.27 +0.3
1,944,747 + HP15_1845 0.28 -0.4
1,944,755 - HP15_1845 0.28 -0.1
1,944,766 - HP15_1845 0.29 -0.9
1,944,766 - HP15_1845 0.29 -0.0
1,944,837 + HP15_1845 0.32 -0.1
1,944,840 - HP15_1845 0.32 +1.0
1,945,026 + HP15_1845 0.41 -0.6
1,945,077 - HP15_1845 0.44 -0.7
1,945,079 + HP15_1845 0.44 -0.3
1,945,087 - HP15_1845 0.44 -0.8

Or see this region's nucleotide sequence