Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1731 and HP15_1732 overlap by 8 nucleotides HP15_1732 and HP15_1733 are separated by 89 nucleotides HP15_1733 and HP15_1734 are separated by 51 nucleotides HP15_1734 and HP15_1735 are separated by 26 nucleotides HP15_1735 and HP15_1736 are separated by 58 nucleotides
HP15_1731: HP15_1731 - conserved hypothetical protein, at 1,831,444 to 1,832,049
_1731
HP15_1732: HP15_1732 - conserved hypothetical protein, at 1,832,042 to 1,832,353
_1732
HP15_1733: HP15_1733 - conserved hypothetical protein, at 1,832,443 to 1,832,985
_1733
HP15_1734: HP15_1734 - ABC-type multidrug transport system, ATPase component, at 1,833,037 to 1,833,957
_1734
HP15_1735: HP15_1735 - ABC transporter, permease protein, at 1,833,984 to 1,834,745
_1735
HP15_1736: HP15_1736 - protein containing DUF192, at 1,834,804 to 1,835,259
_1736
Position (kb) 1833
1834 Strain fitness (log2 ratio) -1
0
1
2
3 at 1832.106 kb on + strand, within HP15_1732 at 1832.183 kb on + strand, within HP15_1732 at 1832.191 kb on - strand, within HP15_1732 at 1832.242 kb on + strand, within HP15_1732 at 1832.404 kb on + strand at 1832.495 kb on + strand at 1832.782 kb on + strand, within HP15_1733 at 1832.795 kb on - strand, within HP15_1733 at 1832.929 kb on - strand, within HP15_1733 at 1832.963 kb on - strand at 1833.485 kb on + strand, within HP15_1734 at 1833.493 kb on - strand, within HP15_1734 at 1833.613 kb on - strand, within HP15_1734 at 1833.821 kb on - strand, within HP15_1734 at 1833.822 kb on - strand, within HP15_1734 at 1834.259 kb on + strand, within HP15_1735 at 1834.290 kb on + strand, within HP15_1735 at 1834.295 kb on + strand, within HP15_1735 at 1834.390 kb on - strand, within HP15_1735 at 1834.747 kb on - strand at 1834.812 kb on + strand at 1834.919 kb on + strand, within HP15_1736 at 1834.919 kb on + strand, within HP15_1736
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,832,106 + HP15_1732 0.21 -0.3 1,832,183 + HP15_1732 0.45 +0.6 1,832,191 - HP15_1732 0.48 -0.4 1,832,242 + HP15_1732 0.64 +1.1 1,832,404 + +3.2 1,832,495 + -1.6 1,832,782 + HP15_1733 0.62 -0.1 1,832,795 - HP15_1733 0.65 -1.1 1,832,929 - HP15_1733 0.90 -0.6 1,832,963 - +1.0 1,833,485 + HP15_1734 0.49 -1.5 1,833,493 - HP15_1734 0.50 -1.5 1,833,613 - HP15_1734 0.63 +0.6 1,833,821 - HP15_1734 0.85 -1.0 1,833,822 - HP15_1734 0.85 +1.4 1,834,259 + HP15_1735 0.36 -0.6 1,834,290 + HP15_1735 0.40 -0.5 1,834,295 + HP15_1735 0.41 +0.6 1,834,390 - HP15_1735 0.53 -0.1 1,834,747 - +0.5 1,834,812 + +1.5 1,834,919 + HP15_1736 0.25 +1.4 1,834,919 + HP15_1736 0.25 +1.1
Or see this region's nucleotide sequence