Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17350

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,811,065	+		PGA1_c17340	0.21	-0.2
1,811,158	-		PGA1_c17340	0.29	+0.4
1,811,158	-		PGA1_c17340	0.29	-1.6
1,811,171	+		PGA1_c17340	0.30	+0.9
1,811,188	+		PGA1_c17340	0.32	-0.5
1,811,194	+		PGA1_c17340	0.32	+0.1
1,811,271	-		PGA1_c17340	0.39	-1.0
1,811,316	+		PGA1_c17340	0.43	-0.7
1,811,316	-		PGA1_c17340	0.43	+0.9
1,811,394	+		PGA1_c17340	0.49	-1.6
1,811,397	-		PGA1_c17340	0.50	-0.9
1,811,448	+		PGA1_c17340	0.54	+2.6
1,811,492	+		PGA1_c17340	0.58	+0.2
1,811,505	+		PGA1_c17340	0.59	-0.9
1,811,511	+		PGA1_c17340	0.60	+0.0
1,811,519	-		PGA1_c17340	0.60	-0.1
1,811,532	+		PGA1_c17340	0.62	-1.0
1,811,580	+		PGA1_c17340	0.66	-0.1
1,811,609	+		PGA1_c17340	0.68	-0.5
1,811,629	-		PGA1_c17340	0.70	+0.2
1,811,630	-		PGA1_c17340	0.70	+0.3
1,811,636	-		PGA1_c17340	0.71	-2.4
1,811,636	-		PGA1_c17340	0.71	-0.0
1,811,651	+		PGA1_c17340	0.72	-2.8
1,811,651	+		PGA1_c17340	0.72	+1.0
1,811,651	+		PGA1_c17340	0.72	-2.1
1,811,651	+		PGA1_c17340	0.72	-0.3
1,811,659	-		PGA1_c17340	0.73	-0.6
1,811,659	-		PGA1_c17340	0.73	-0.0
1,811,659	-		PGA1_c17340	0.73	-0.9
1,811,707	+		PGA1_c17340	0.77	-1.3
1,811,717	+		PGA1_c17340	0.78	-1.4
1,811,725	-		PGA1_c17340	0.78	-1.9
1,811,739	+		PGA1_c17340	0.80	+0.2
1,811,758	+		PGA1_c17340	0.81	-0.9
1,811,766	-		PGA1_c17340	0.82	-0.3
1,811,770	+		PGA1_c17340	0.82	-0.4
1,811,811	-		PGA1_c17340	0.86	-1.7
1,811,899	+				+0.2
1,811,906	-				+0.3
1,811,922	-				-1.6
1,811,985	-				-1.1
1,812,033	-				-0.1
1,812,124	-		PGA1_c17350	0.14	-0.7
1,812,124	-		PGA1_c17350	0.14	-1.3
1,812,228	+		PGA1_c17350	0.24	-2.1
1,812,263	+		PGA1_c17350	0.27	-2.4
1,812,281	-		PGA1_c17350	0.29	-2.7
1,812,281	-		PGA1_c17350	0.29	-0.7
1,812,355	+		PGA1_c17350	0.36	-1.1
1,812,373	-		PGA1_c17350	0.38	-0.7
1,812,520	+		PGA1_c17350	0.52	-1.1
1,812,528	-		PGA1_c17350	0.52	-0.4
1,812,557	+		PGA1_c17350	0.55	-0.4
1,812,565	-		PGA1_c17350	0.56	-1.4
1,812,573	+		PGA1_c17350	0.57	+1.5
1,812,626	+		PGA1_c17350	0.62	-0.0
1,812,639	-		PGA1_c17350	0.63	+0.0
1,812,708	-		PGA1_c17350	0.70	+0.9
1,812,732	+		PGA1_c17350	0.72	-2.3
1,812,742	-		PGA1_c17350	0.73	-0.4
1,812,835	+		PGA1_c17350	0.82	+0.3
1,813,054	-				-1.3
1,813,087	-				-1.3
1,813,087	-				+1.9
1,813,087	-				-0.0
1,813,087	-				-0.4
1,813,097	-				+1.2
1,813,113	-		PGA1_c17360	0.10	-1.7
1,813,141	-		PGA1_c17360	0.13	-0.3
1,813,199	+		PGA1_c17360	0.20	-0.6
1,813,287	+		PGA1_c17360	0.30	-1.0
1,813,308	-		PGA1_c17360	0.33	+1.7
1,813,332	+		PGA1_c17360	0.35	+0.9
1,813,460	+		PGA1_c17360	0.50	-0.3
1,813,468	-		PGA1_c17360	0.51	+0.9
1,813,492	-		PGA1_c17360	0.54	+0.3
1,813,492	-		PGA1_c17360	0.54	-0.2
1,813,541	+		PGA1_c17360	0.59	-0.0
1,813,558	+		PGA1_c17360	0.61	-0.4
1,813,558	+		PGA1_c17360	0.61	+0.6
1,813,610	+		PGA1_c17360	0.67	+0.3
1,813,619	-		PGA1_c17360	0.68	-0.6
1,813,626	+		PGA1_c17360	0.69	-1.6
1,813,629	-		PGA1_c17360	0.69	+0.6
1,813,634	-		PGA1_c17360	0.70	+0.4
1,813,634	-		PGA1_c17360	0.70	-0.2
1,813,648	+		PGA1_c17360	0.71	-0.9
1,813,679	+		PGA1_c17360	0.75	+0.4
1,813,679	+		PGA1_c17360	0.75	-0.3
1,813,679	+		PGA1_c17360	0.75	-0.1
1,813,687	-		PGA1_c17360	0.76	+1.7
1,813,695	-		PGA1_c17360	0.77	+1.9
1,813,716	+		PGA1_c17360	0.79	-0.6
1,813,734	+		PGA1_c17360	0.81	-1.8
1,813,734	+		PGA1_c17360	0.81	-1.0
1,813,763	-		PGA1_c17360	0.84	+0.0
1,813,773	-		PGA1_c17360	0.86	-0.3
1,813,780	+		PGA1_c17360	0.86	-1.0
1,813,780	+		PGA1_c17360	0.86	-0.4
1,813,782	+		PGA1_c17360	0.87	-1.1
1,813,810	+		PGA1_c17360	0.90	-0.1
1,813,827	+				+0.4
1,813,832	+				+1.0
1,813,860	+				+0.3
1,813,868	-				+0.4
1,813,868	-				-1.7
1,813,870	+				-1.1
1,813,870	+				-0.5
1,813,870	+				+0.7
1,813,870	+				+0.1
1,813,870	+				-0.2
1,813,870	+				+0.9
1,813,870	+				-0.1
1,813,870	+				+0.8
1,813,870	+				-0.7
1,813,878	-				+1.0
1,813,878	-				-1.7
1,813,878	-				+0.1
1,813,878	-				+0.3
1,813,878	-				+0.2
1,813,878	-				+0.5
1,813,878	-				+1.1
1,813,878	-				-0.5
1,813,878	-				-1.7
1,813,878	-				-1.1
1,813,878	-				+1.7
1,813,878	-				-3.0
1,813,878	-				+1.3
1,813,878	-				+1.4
1,813,878	-				-0.2
1,813,878	-				+0.7
1,813,878	-				+0.1
1,813,878	-				-1.3
1,813,878	-				+0.5
1,813,878	-				+0.2
1,813,878	-				+0.7
1,813,878	-				-0.0
1,813,878	-				+0.7
1,813,878	-				-0.6
1,813,878	-				-2.6
1,813,878	-				+0.1
1,813,878	-				+0.1
1,813,878	-				+0.9
1,813,878	-				+0.5
1,813,878	-				-0.4
1,813,878	-				-0.1
1,813,878	-				+0.1
1,813,878	-				-1.4
1,813,878	-				-0.6
1,813,878	-				+0.7
1,813,895	-				+0.4
1,813,897	+				+0.3
1,813,900	-				+1.8
1,813,905	-				+1.4
1,813,912	+				-1.8
1,813,912	-				-0.6
1,813,912	-				+0.7
1,813,917	-				-0.4
1,813,920	+				+0.1
1,813,922	+				+0.6
1,813,925	-				-0.6
1,813,929	+				+0.1
1,813,931	+				-0.4
1,813,931	+				+0.3
1,813,931	+				-0.4
1,813,931	+				+0.1
1,813,931	+				-0.3
1,813,931	+				+0.4
1,813,931	+				-0.5
1,813,931	+				+0.8
1,813,931	+				+1.1
1,813,931	+				+2.0
1,813,931	+				+0.6
1,813,931	+				+0.5
1,813,931	+				-0.5
1,813,931	+				+0.8
1,813,931	+				-0.0
1,813,931	+				+0.2
1,813,931	+				-1.7
1,813,931	+				-1.6
1,813,931	+				+0.8
1,813,931	+				+1.3
1,813,933	-				+0.9
1,813,933	-				-0.1
1,813,935	-				+0.3
1,813,937	-				+0.3
1,813,939	+				+1.5
1,813,939	+				+0.1
1,813,939	+				+0.3
1,813,939	+				+0.4
1,813,939	+				-0.0
1,813,939	+				+0.0
1,813,939	+				+0.4
1,813,939	-				+0.7
1,813,939	-				+0.4
1,813,939	-				-0.3
1,813,939	-				+0.3
1,813,939	-				+0.7
1,813,939	-				+1.3
1,813,939	-				-1.6
1,813,939	-				-0.4
1,813,939	-				+0.4
1,813,939	-				-1.5
1,813,939	-				+0.8
1,813,939	-				+0.0
1,813,939	-				-0.2
1,813,939	-				+0.9
1,813,939	-				+1.0
1,813,939	-				+0.1
1,813,939	-				+0.1
1,813,939	-				+0.3
1,813,944	+				+1.5
1,813,947	-				+0.3
1,813,947	-				+1.2
1,813,949	+				-0.7
1,813,949	+				+1.6
1,813,949	+				-0.1
1,813,949	+				+0.1
1,813,949	+				-1.0
1,813,949	+				+0.6
1,813,949	+				+0.2
1,813,949	+				-0.7
1,813,949	+				+1.5
1,813,949	+				-0.6
1,813,953	+				-0.4
1,813,957	-				+0.1
1,813,957	-				-0.9
1,813,957	-				-0.2
1,813,957	-				-0.6
1,813,957	-				-1.7
1,813,957	-				-0.9
1,813,957	-				-0.2
1,813,957	-				+0.3
1,813,958	-				+0.1
1,813,996	+				+0.2