Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1652 and HP15_1653 are separated by 242 nucleotides HP15_1653 and HP15_1654 are separated by 46 nucleotides HP15_1654 and HP15_1655 are separated by 225 nucleotides HP15_1655 and HP15_1656 are separated by 26 nucleotides
HP15_1652: HP15_1652 - disulfide isomerase/thiol-disulfide oxidase-like protein, at 1,748,603 to 1,749,370
_1652
HP15_1653: HP15_1653 - protein containing DUF1348, at 1,749,613 to 1,750,083
_1653
HP15_1654: HP15_1654 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 1,750,130 to 1,750,690
_1654
HP15_1655: HP15_1655 - transcriptional regulator, TetR family, at 1,750,916 to 1,751,485
_1655
HP15_1656: HP15_1656 - dihydrolipoamide dehydrogenase-like protein, at 1,751,512 to 1,751,757
_1656
Position (kb)
1750
1751 Strain fitness (log2 ratio)
-1
0
1
2 at 1749.177 kb on - strand, within HP15_1652 at 1749.247 kb on + strand, within HP15_1652 at 1749.404 kb on + strand at 1749.651 kb on + strand at 1749.839 kb on + strand, within HP15_1653 at 1749.973 kb on - strand, within HP15_1653 at 1749.990 kb on + strand, within HP15_1653 at 1750.087 kb on - strand at 1750.087 kb on - strand at 1750.123 kb on + strand at 1750.131 kb on - strand at 1750.133 kb on + strand at 1750.171 kb on - strand at 1750.204 kb on + strand, within HP15_1654 at 1750.204 kb on - strand, within HP15_1654 at 1750.221 kb on - strand, within HP15_1654 at 1750.356 kb on - strand, within HP15_1654 at 1750.383 kb on - strand, within HP15_1654 at 1750.598 kb on - strand, within HP15_1654 at 1750.635 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.802 kb on + strand at 1750.810 kb on - strand at 1750.891 kb on - strand at 1751.058 kb on + strand, within HP15_1655 at 1751.351 kb on - strand, within HP15_1655 at 1751.438 kb on + strand at 1751.541 kb on + strand, within HP15_1656 at 1751.582 kb on - strand, within HP15_1656 at 1751.614 kb on + strand, within HP15_1656 at 1751.673 kb on - strand, within HP15_1656
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,749,177 - HP15_1652 0.75 +0.7 1,749,247 + HP15_1652 0.84 -0.9 1,749,404 + +0.4 1,749,651 + +0.4 1,749,839 + HP15_1653 0.48 -0.3 1,749,973 - HP15_1653 0.76 +0.5 1,749,990 + HP15_1653 0.80 +0.6 1,750,087 - -1.3 1,750,087 - -0.8 1,750,123 + +0.0 1,750,131 - -1.4 1,750,133 + -0.1 1,750,171 - +2.1 1,750,204 + HP15_1654 0.13 +0.4 1,750,204 - HP15_1654 0.13 +0.6 1,750,221 - HP15_1654 0.16 +1.6 1,750,356 - HP15_1654 0.40 +0.6 1,750,383 - HP15_1654 0.45 +0.2 1,750,598 - HP15_1654 0.83 +0.3 1,750,635 + -0.4 1,750,802 + +0.2 1,750,802 + +0.9 1,750,802 + +0.1 1,750,802 + +2.1 1,750,810 - +0.3 1,750,891 - -0.3 1,751,058 + HP15_1655 0.25 -0.0 1,751,351 - HP15_1655 0.76 -0.7 1,751,438 + +0.6 1,751,541 + HP15_1656 0.12 +0.2 1,751,582 - HP15_1656 0.28 +0.8 1,751,614 + HP15_1656 0.41 +0.1 1,751,673 - HP15_1656 0.65 +1.0
Or see this region's nucleotide sequence