Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1640 and HP15_1641 are separated by 77 nucleotides HP15_1641 and HP15_1642 are separated by 68 nucleotides HP15_1642 and HP15_1643 are separated by 109 nucleotides HP15_1643 and HP15_1644 are separated by 69 nucleotides HP15_1644 and HP15_1645 are separated by 5 nucleotides
HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839
_1640
HP15_1641: HP15_1641 - secreted protein, at 1,740,917 to 1,741,087
_1641
HP15_1642: HP15_1642 - transcriptional Regulator, AraC family protein, at 1,741,156 to 1,742,025
_1642
HP15_1643: HP15_1643 - YHS domain protein, at 1,742,135 to 1,742,605
_1643
HP15_1644: HP15_1644 - signal peptide protein-like protein, at 1,742,675 to 1,742,974
_1644
HP15_1645: HP15_1645 - UPF0276 protein containing DUF692, at 1,742,980 to 1,743,891
_1645
Position (kb)
1741
1742
1743 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1740.382 kb on + strand, within HP15_1640 at 1740.382 kb on + strand, within HP15_1640 at 1740.437 kb on - strand, within HP15_1640 at 1740.470 kb on - strand, within HP15_1640 at 1740.483 kb on + strand, within HP15_1640 at 1740.491 kb on - strand, within HP15_1640 at 1740.493 kb on + strand, within HP15_1640 at 1740.501 kb on - strand, within HP15_1640 at 1740.511 kb on + strand, within HP15_1640 at 1740.669 kb on + strand, within HP15_1640 at 1740.874 kb on - strand at 1741.198 kb on + strand at 1741.304 kb on - strand, within HP15_1642 at 1741.304 kb on - strand, within HP15_1642 at 1741.363 kb on + strand, within HP15_1642 at 1741.371 kb on - strand, within HP15_1642 at 1741.429 kb on + strand, within HP15_1642 at 1741.487 kb on - strand, within HP15_1642 at 1741.495 kb on + strand, within HP15_1642 at 1741.495 kb on + strand, within HP15_1642 at 1741.503 kb on - strand, within HP15_1642 at 1741.542 kb on - strand, within HP15_1642 at 1741.602 kb on - strand, within HP15_1642 at 1741.603 kb on - strand, within HP15_1642 at 1741.620 kb on + strand, within HP15_1642 at 1741.648 kb on - strand, within HP15_1642 at 1741.682 kb on - strand, within HP15_1642 at 1741.704 kb on + strand at 1741.722 kb on - strand, within HP15_1642 at 1741.726 kb on + strand, within HP15_1642 at 1741.731 kb on + strand, within HP15_1642 at 1741.749 kb on - strand, within HP15_1642 at 1741.807 kb on + strand, within HP15_1642 at 1741.807 kb on - strand, within HP15_1642 at 1741.888 kb on + strand, within HP15_1642 at 1742.087 kb on + strand at 1742.125 kb on - strand at 1742.185 kb on - strand, within HP15_1643 at 1742.187 kb on - strand, within HP15_1643 at 1742.311 kb on - strand, within HP15_1643 at 1742.326 kb on - strand, within HP15_1643 at 1742.396 kb on + strand, within HP15_1643 at 1742.413 kb on - strand, within HP15_1643 at 1742.424 kb on + strand, within HP15_1643 at 1742.485 kb on + strand, within HP15_1643 at 1742.538 kb on - strand, within HP15_1643 at 1742.563 kb on + strand at 1742.583 kb on - strand at 1742.673 kb on + strand at 1742.729 kb on + strand, within HP15_1644 at 1742.761 kb on - strand, within HP15_1644 at 1742.839 kb on + strand, within HP15_1644 at 1742.839 kb on + strand, within HP15_1644 at 1742.847 kb on - strand, within HP15_1644 at 1742.849 kb on - strand, within HP15_1644 at 1742.852 kb on - strand, within HP15_1644 at 1742.854 kb on + strand, within HP15_1644 at 1742.857 kb on - strand, within HP15_1644 at 1742.862 kb on - strand, within HP15_1644
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,740,382 + HP15_1640 0.53 -0.0 1,740,382 + HP15_1640 0.53 -0.3 1,740,437 - HP15_1640 0.59 +0.5 1,740,470 - HP15_1640 0.62 -0.9 1,740,483 + HP15_1640 0.64 +0.1 1,740,491 - HP15_1640 0.64 +1.9 1,740,493 + HP15_1640 0.65 -0.8 1,740,501 - HP15_1640 0.65 +0.6 1,740,511 + HP15_1640 0.66 +0.2 1,740,669 + HP15_1640 0.83 +0.9 1,740,874 - -1.5 1,741,198 + -1.0 1,741,304 - HP15_1642 0.17 -0.1 1,741,304 - HP15_1642 0.17 +0.2 1,741,363 + HP15_1642 0.24 +0.4 1,741,371 - HP15_1642 0.25 +0.3 1,741,429 + HP15_1642 0.31 +1.3 1,741,487 - HP15_1642 0.38 +0.7 1,741,495 + HP15_1642 0.39 +0.2 1,741,495 + HP15_1642 0.39 +1.1 1,741,503 - HP15_1642 0.40 +1.0 1,741,542 - HP15_1642 0.44 -0.0 1,741,602 - HP15_1642 0.51 -0.3 1,741,603 - HP15_1642 0.51 +0.4 1,741,620 + HP15_1642 0.53 +1.2 1,741,648 - HP15_1642 0.57 -0.3 1,741,682 - HP15_1642 0.60 +1.1 1,741,704 + +1.9 1,741,722 - HP15_1642 0.65 +0.7 1,741,726 + HP15_1642 0.66 -0.6 1,741,731 + HP15_1642 0.66 -0.1 1,741,749 - HP15_1642 0.68 -0.5 1,741,807 + HP15_1642 0.75 +0.6 1,741,807 - HP15_1642 0.75 +1.1 1,741,888 + HP15_1642 0.84 +0.2 1,742,087 + +1.4 1,742,125 - -2.0 1,742,185 - HP15_1643 0.11 -0.2 1,742,187 - HP15_1643 0.11 +0.7 1,742,311 - HP15_1643 0.37 +1.1 1,742,326 - HP15_1643 0.41 +0.2 1,742,396 + HP15_1643 0.55 +0.1 1,742,413 - HP15_1643 0.59 -0.4 1,742,424 + HP15_1643 0.61 -0.3 1,742,485 + HP15_1643 0.74 +0.8 1,742,538 - HP15_1643 0.86 +1.9 1,742,563 + +1.8 1,742,583 - -0.4 1,742,673 + -0.7 1,742,729 + HP15_1644 0.18 -0.6 1,742,761 - HP15_1644 0.29 -1.9 1,742,839 + HP15_1644 0.55 +0.1 1,742,839 + HP15_1644 0.55 +0.8 1,742,847 - HP15_1644 0.57 +1.0 1,742,849 - HP15_1644 0.58 -0.2 1,742,852 - HP15_1644 0.59 -1.3 1,742,854 + HP15_1644 0.60 +0.3 1,742,857 - HP15_1644 0.61 -0.2 1,742,862 - HP15_1644 0.62 -0.3
Or see this region's nucleotide sequence