Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01480 and PGA1_c01490 are separated by 414 nucleotides PGA1_c01490 and PGA1_c01500 are separated by 15 nucleotides PGA1_c01500 and PGA1_c01510 are separated by 18 nucleotides
PGA1_c01480: PGA1_c01480 - Protein of unknown function (DUF3118)., at 144,467 to 145,243
_c01480
PGA1_c01490: PGA1_c01490 - 30S ribosomal protein S12, at 145,658 to 146,029
_c01490
PGA1_c01500: PGA1_c01500 - 30S ribosomal protein S7, at 146,045 to 146,515
_c01500
PGA1_c01510: PGA1_c01510 - elongation factor G, at 146,534 to 148,654
_c01510
Position (kb) 146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 145.102 kb on - strand, within PGA1_c01480 at 145.102 kb on - strand, within PGA1_c01480 at 145.146 kb on + strand, within PGA1_c01480 at 145.149 kb on - strand, within PGA1_c01480 at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.168 kb on + strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.176 kb on - strand at 145.178 kb on + strand at 145.230 kb on + strand at 145.230 kb on + strand at 145.230 kb on + strand at 145.238 kb on - strand at 145.254 kb on - strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.273 kb on + strand at 145.281 kb on - strand at 145.296 kb on + strand at 145.304 kb on - strand at 145.311 kb on - strand at 145.351 kb on - strand at 145.394 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 145,102 - PGA1_c01480 0.82 -0.1 145,102 - PGA1_c01480 0.82 -0.8 145,146 + PGA1_c01480 0.87 -1.0 145,149 - PGA1_c01480 0.88 -0.6 145,168 + -0.8 145,168 + -0.9 145,168 + -1.1 145,168 + +0.2 145,168 + +0.0 145,168 + -0.1 145,168 + -1.5 145,168 + +0.0 145,176 - -2.5 145,176 - -0.4 145,176 - -0.4 145,176 - +0.1 145,176 - -0.7 145,176 - -1.9 145,178 + -2.2 145,230 + -0.8 145,230 + -0.3 145,230 + -1.0 145,238 - +0.8 145,254 - +1.1 145,273 + -0.1 145,273 + +0.2 145,273 + -0.4 145,273 + +1.0 145,273 + -0.5 145,281 - +0.9 145,296 + +1.7 145,304 - -0.1 145,311 - +1.8 145,351 - -0.7 145,394 - -0.3
Or see this region's nucleotide sequence