Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1397 and HP15_1398 are separated by 137 nucleotides HP15_1398 and HP15_1399 are separated by 153 nucleotides
HP15_1397: HP15_1397 - peroxidase/catalase HPI, at 1,471,884 to 1,474,106
_1397
HP15_1398: HP15_1398 - tRNA-dihydrouridine synthase C, at 1,474,244 to 1,475,215
_1398
HP15_1399: HP15_1399 - metal-dependent hydrolase-like protein, at 1,475,369 to 1,476,334
_1399
Position (kb)
1474
1475
1476 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1473.329 kb on + strand, within HP15_1397 at 1473.329 kb on + strand, within HP15_1397 at 1473.367 kb on + strand, within HP15_1397 at 1473.541 kb on - strand, within HP15_1397 at 1473.694 kb on - strand, within HP15_1397 at 1473.908 kb on - strand at 1473.942 kb on + strand at 1474.003 kb on + strand at 1474.074 kb on + strand at 1474.110 kb on - strand at 1474.121 kb on + strand at 1474.325 kb on - strand at 1474.431 kb on + strand, within HP15_1398 at 1474.506 kb on + strand, within HP15_1398 at 1474.558 kb on + strand, within HP15_1398 at 1474.566 kb on - strand, within HP15_1398 at 1474.577 kb on - strand, within HP15_1398 at 1474.582 kb on - strand, within HP15_1398 at 1474.621 kb on + strand, within HP15_1398 at 1474.719 kb on + strand, within HP15_1398 at 1474.817 kb on + strand, within HP15_1398 at 1474.866 kb on + strand, within HP15_1398 at 1474.875 kb on + strand, within HP15_1398 at 1474.883 kb on - strand, within HP15_1398 at 1474.934 kb on + strand, within HP15_1398 at 1474.989 kb on - strand, within HP15_1398 at 1475.000 kb on - strand, within HP15_1398 at 1475.051 kb on - strand, within HP15_1398 at 1475.172 kb on + strand at 1475.180 kb on - strand at 1475.251 kb on - strand at 1475.265 kb on + strand at 1475.453 kb on + strand at 1475.461 kb on - strand at 1475.461 kb on - strand at 1475.499 kb on - strand, within HP15_1399 at 1475.503 kb on - strand, within HP15_1399 at 1475.667 kb on + strand, within HP15_1399 at 1475.675 kb on - strand, within HP15_1399 at 1475.835 kb on - strand, within HP15_1399 at 1475.937 kb on - strand, within HP15_1399 at 1475.969 kb on + strand, within HP15_1399 at 1475.999 kb on + strand, within HP15_1399 at 1476.212 kb on + strand, within HP15_1399
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,473,329 + HP15_1397 0.65 -1.8 1,473,329 + HP15_1397 0.65 +0.1 1,473,367 + HP15_1397 0.67 -1.4 1,473,541 - HP15_1397 0.75 -0.3 1,473,694 - HP15_1397 0.81 -0.6 1,473,908 - -1.1 1,473,942 + +0.8 1,474,003 + -0.7 1,474,074 + +0.2 1,474,110 - +0.6 1,474,121 + +0.5 1,474,325 - -0.7 1,474,431 + HP15_1398 0.19 -1.1 1,474,506 + HP15_1398 0.27 +0.5 1,474,558 + HP15_1398 0.32 +1.1 1,474,566 - HP15_1398 0.33 +1.9 1,474,577 - HP15_1398 0.34 +0.3 1,474,582 - HP15_1398 0.35 -0.8 1,474,621 + HP15_1398 0.39 -0.3 1,474,719 + HP15_1398 0.49 +0.2 1,474,817 + HP15_1398 0.59 -1.2 1,474,866 + HP15_1398 0.64 -0.4 1,474,875 + HP15_1398 0.65 +0.6 1,474,883 - HP15_1398 0.66 -0.5 1,474,934 + HP15_1398 0.71 +1.0 1,474,989 - HP15_1398 0.77 +1.6 1,475,000 - HP15_1398 0.78 -0.6 1,475,051 - HP15_1398 0.83 +1.5 1,475,172 + -0.2 1,475,180 - -0.1 1,475,251 - -0.7 1,475,265 + -0.3 1,475,453 + +0.8 1,475,461 - -0.1 1,475,461 - +0.4 1,475,499 - HP15_1399 0.13 +0.3 1,475,503 - HP15_1399 0.14 -0.1 1,475,667 + HP15_1399 0.31 +0.9 1,475,675 - HP15_1399 0.32 +1.5 1,475,835 - HP15_1399 0.48 -0.8 1,475,937 - HP15_1399 0.59 -0.6 1,475,969 + HP15_1399 0.62 +0.6 1,475,999 + HP15_1399 0.65 +0.0 1,476,212 + HP15_1399 0.87 -2.2
Or see this region's nucleotide sequence