Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotides HP15_rRNA9 and HP15_1247 are separated by 66 nucleotides HP15_1247 and HP15_1248 overlap by 4 nucleotides HP15_1248 and HP15_1249 overlap by 4 nucleotides
HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951
_rRNA8
HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166
_rRNA9
HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913
_1247
HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547
_1248
HP15_1249: HP15_1249 - two-component system sensor protein, at 1,306,544 to 1,310,062
_1249
Position (kb)
1304
1305
1306
1307 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1304.231 kb on + strand at 1304.442 kb on + strand, within HP15_1247 at 1304.519 kb on - strand, within HP15_1247 at 1304.528 kb on + strand, within HP15_1247 at 1304.627 kb on - strand, within HP15_1247 at 1304.661 kb on + strand, within HP15_1247 at 1304.828 kb on + strand, within HP15_1247 at 1305.037 kb on + strand at 1305.065 kb on - strand at 1305.172 kb on - strand, within HP15_1248 at 1305.283 kb on - strand, within HP15_1248 at 1305.317 kb on - strand, within HP15_1248 at 1305.340 kb on - strand, within HP15_1248 at 1305.404 kb on - strand, within HP15_1248 at 1305.435 kb on - strand, within HP15_1248 at 1305.476 kb on + strand, within HP15_1248 at 1305.596 kb on + strand, within HP15_1248 at 1305.599 kb on - strand, within HP15_1248 at 1305.692 kb on + strand, within HP15_1248 at 1305.821 kb on + strand, within HP15_1248 at 1305.871 kb on - strand, within HP15_1248 at 1306.062 kb on + strand, within HP15_1248 at 1306.185 kb on - strand, within HP15_1248 at 1306.394 kb on + strand at 1306.531 kb on + strand at 1306.768 kb on + strand at 1306.922 kb on + strand, within HP15_1249 at 1306.965 kb on + strand, within HP15_1249
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,304,231 + +0.6 1,304,442 + HP15_1247 0.31 +0.5 1,304,519 - HP15_1247 0.42 +0.0 1,304,528 + HP15_1247 0.43 +1.6 1,304,627 - HP15_1247 0.58 +1.8 1,304,661 + HP15_1247 0.63 +0.5 1,304,828 + HP15_1247 0.87 +0.8 1,305,037 + +0.7 1,305,065 - -0.3 1,305,172 - HP15_1248 0.16 +0.8 1,305,283 - HP15_1248 0.23 -1.8 1,305,317 - HP15_1248 0.25 +1.3 1,305,340 - HP15_1248 0.26 +0.6 1,305,404 - HP15_1248 0.30 +0.6 1,305,435 - HP15_1248 0.32 -0.5 1,305,476 + HP15_1248 0.35 +0.4 1,305,596 + HP15_1248 0.42 +0.3 1,305,599 - HP15_1248 0.42 +0.9 1,305,692 + HP15_1248 0.48 -0.6 1,305,821 + HP15_1248 0.56 +0.5 1,305,871 - HP15_1248 0.59 +1.4 1,306,062 + HP15_1248 0.70 +0.1 1,306,185 - HP15_1248 0.78 +3.0 1,306,394 + +0.2 1,306,531 + -0.2 1,306,768 + +1.1 1,306,922 + HP15_1249 0.11 -0.2 1,306,965 + HP15_1249 0.12 -0.1
Or see this region's nucleotide sequence