Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA7 and HP15_tRNA20 are separated by 92 nucleotides HP15_tRNA20 and HP15_tRNA21 are separated by 122 nucleotides HP15_tRNA21 and HP15_rRNA8 are separated by 340 nucleotides HP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotides HP15_rRNA9 and HP15_1247 are separated by 66 nucleotides HP15_1247 and HP15_1248 overlap by 4 nucleotides
HP15_rRNA7: HP15_rRNA7 - 16S ribosomal RNA, at 1,298,821 to 1,300,352
_rRNA7
HP15_tRNA20: HP15_tRNA20 - tRNA-Ile, at 1,300,445 to 1,300,521
_tRNA20
HP15_tRNA21: HP15_tRNA21 - tRNA-Ala, at 1,300,644 to 1,300,719
_tRNA21
HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951
_rRNA8
HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166
_rRNA9
HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913
_1247
HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547
_1248
Position (kb)
1301
1302
1303
1304 Strain fitness (log2 ratio)
-1
0
1
2 at 1304.231 kb on + strand at 1304.442 kb on + strand, within HP15_1247 at 1304.519 kb on - strand, within HP15_1247 at 1304.528 kb on + strand, within HP15_1247 at 1304.627 kb on - strand, within HP15_1247 at 1304.661 kb on + strand, within HP15_1247 at 1304.828 kb on + strand, within HP15_1247
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,304,231 + +0.6 1,304,442 + HP15_1247 0.31 +0.5 1,304,519 - HP15_1247 0.42 +0.0 1,304,528 + HP15_1247 0.43 +1.6 1,304,627 - HP15_1247 0.58 +1.8 1,304,661 + HP15_1247 0.63 +0.5 1,304,828 + HP15_1247 0.87 +0.8
Or see this region's nucleotide sequence