Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1067 and HP15_1068 are separated by 46 nucleotides HP15_1068 and HP15_1069 are separated by 184 nucleotides
HP15_1067: HP15_1067 - BNR/Asp-box repeat protein, at 1,093,107 to 1,094,240
_1067
HP15_1068: HP15_1068 - transporter, at 1,094,287 to 1,096,671
_1068
HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839
_1069
Position (kb)
1094
1095
1096
1097 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1093.328 kb on + strand, within HP15_1067 at 1093.388 kb on - strand, within HP15_1067 at 1093.574 kb on + strand, within HP15_1067 at 1093.724 kb on + strand, within HP15_1067 at 1093.907 kb on + strand, within HP15_1067 at 1093.907 kb on + strand, within HP15_1067 at 1093.915 kb on - strand, within HP15_1067 at 1093.915 kb on - strand, within HP15_1067 at 1093.917 kb on + strand, within HP15_1067 at 1093.917 kb on + strand, within HP15_1067 at 1093.920 kb on - strand, within HP15_1067 at 1093.920 kb on - strand, within HP15_1067 at 1093.925 kb on - strand, within HP15_1067 at 1093.939 kb on + strand, within HP15_1067 at 1094.087 kb on + strand, within HP15_1067 at 1094.131 kb on - strand at 1094.289 kb on + strand at 1094.416 kb on + strand at 1094.429 kb on - strand at 1094.438 kb on - strand at 1094.537 kb on - strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.555 kb on + strand, within HP15_1068 at 1094.578 kb on + strand, within HP15_1068 at 1094.597 kb on + strand, within HP15_1068 at 1094.597 kb on + strand, within HP15_1068 at 1094.615 kb on - strand, within HP15_1068 at 1094.639 kb on - strand, within HP15_1068 at 1094.684 kb on + strand, within HP15_1068 at 1094.985 kb on + strand, within HP15_1068 at 1095.063 kb on + strand, within HP15_1068 at 1095.179 kb on - strand, within HP15_1068 at 1095.219 kb on - strand, within HP15_1068 at 1095.226 kb on - strand, within HP15_1068 at 1095.383 kb on - strand, within HP15_1068 at 1095.448 kb on - strand, within HP15_1068 at 1095.502 kb on + strand, within HP15_1068 at 1095.536 kb on + strand, within HP15_1068 at 1095.602 kb on + strand, within HP15_1068 at 1095.670 kb on - strand, within HP15_1068 at 1095.731 kb on + strand, within HP15_1068 at 1095.731 kb on + strand, within HP15_1068 at 1095.739 kb on - strand, within HP15_1068 at 1095.739 kb on - strand, within HP15_1068 at 1095.761 kb on - strand, within HP15_1068 at 1095.791 kb on - strand, within HP15_1068 at 1095.934 kb on - strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1095.978 kb on + strand, within HP15_1068 at 1096.001 kb on + strand, within HP15_1068 at 1096.032 kb on + strand, within HP15_1068 at 1096.098 kb on + strand, within HP15_1068 at 1096.129 kb on + strand, within HP15_1068 at 1096.129 kb on + strand, within HP15_1068 at 1096.206 kb on - strand, within HP15_1068 at 1096.251 kb on - strand, within HP15_1068 at 1096.251 kb on - strand, within HP15_1068 at 1096.270 kb on - strand, within HP15_1068 at 1096.282 kb on - strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.316 kb on + strand, within HP15_1068 at 1096.450 kb on - strand at 1096.495 kb on + strand at 1096.935 kb on + strand at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.178 kb on - strand, within HP15_1069 at 1097.205 kb on - strand, within HP15_1069 at 1097.228 kb on - strand, within HP15_1069 at 1097.243 kb on - strand, within HP15_1069 at 1097.371 kb on - strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.418 kb on - strand, within HP15_1069 at 1097.434 kb on + strand, within HP15_1069 at 1097.442 kb on - strand, within HP15_1069 at 1097.502 kb on + strand at 1097.543 kb on - strand, within HP15_1069 at 1097.660 kb on - strand, within HP15_1069
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml remove 1,093,328 + HP15_1067 0.19 -1.0 1,093,388 - HP15_1067 0.25 -0.0 1,093,574 + HP15_1067 0.41 -0.3 1,093,724 + HP15_1067 0.54 -0.1 1,093,907 + HP15_1067 0.71 +1.4 1,093,907 + HP15_1067 0.71 +1.7 1,093,915 - HP15_1067 0.71 -0.1 1,093,915 - HP15_1067 0.71 +0.2 1,093,917 + HP15_1067 0.71 +1.0 1,093,917 + HP15_1067 0.71 -0.3 1,093,920 - HP15_1067 0.72 +1.4 1,093,920 - HP15_1067 0.72 +0.4 1,093,925 - HP15_1067 0.72 -0.2 1,093,939 + HP15_1067 0.73 +0.4 1,094,087 + HP15_1067 0.86 -0.6 1,094,131 - -0.4 1,094,289 + +0.2 1,094,416 + -0.6 1,094,429 - -0.1 1,094,438 - -2.1 1,094,537 - HP15_1068 0.10 -0.6 1,094,555 + HP15_1068 0.11 -1.2 1,094,555 + HP15_1068 0.11 -0.1 1,094,555 + HP15_1068 0.11 -0.5 1,094,578 + HP15_1068 0.12 +0.5 1,094,597 + HP15_1068 0.13 +0.7 1,094,597 + HP15_1068 0.13 -2.2 1,094,615 - HP15_1068 0.14 -0.6 1,094,639 - HP15_1068 0.15 -0.1 1,094,684 + HP15_1068 0.17 +0.5 1,094,985 + HP15_1068 0.29 -0.6 1,095,063 + HP15_1068 0.33 -0.7 1,095,179 - HP15_1068 0.37 -0.7 1,095,219 - HP15_1068 0.39 +0.3 1,095,226 - HP15_1068 0.39 +0.1 1,095,383 - HP15_1068 0.46 -0.5 1,095,448 - HP15_1068 0.49 -0.4 1,095,502 + HP15_1068 0.51 -0.2 1,095,536 + HP15_1068 0.52 +0.8 1,095,602 + HP15_1068 0.55 +1.7 1,095,670 - HP15_1068 0.58 -0.1 1,095,731 + HP15_1068 0.61 -0.0 1,095,731 + HP15_1068 0.61 -0.2 1,095,739 - HP15_1068 0.61 +0.5 1,095,739 - HP15_1068 0.61 -0.8 1,095,761 - HP15_1068 0.62 +0.5 1,095,791 - HP15_1068 0.63 -0.4 1,095,934 - HP15_1068 0.69 -0.8 1,095,978 + HP15_1068 0.71 -1.4 1,095,978 + HP15_1068 0.71 -0.8 1,095,978 + HP15_1068 0.71 -0.1 1,096,001 + HP15_1068 0.72 +0.1 1,096,032 + HP15_1068 0.73 -0.3 1,096,098 + HP15_1068 0.76 -0.7 1,096,129 + HP15_1068 0.77 -1.9 1,096,129 + HP15_1068 0.77 -0.3 1,096,206 - HP15_1068 0.80 -1.6 1,096,251 - HP15_1068 0.82 +0.4 1,096,251 - HP15_1068 0.82 +1.3 1,096,270 - HP15_1068 0.83 -0.5 1,096,282 - HP15_1068 0.84 +0.2 1,096,316 + HP15_1068 0.85 -1.2 1,096,316 + HP15_1068 0.85 +1.5 1,096,316 + HP15_1068 0.85 -0.2 1,096,316 + HP15_1068 0.85 -0.8 1,096,450 - -0.6 1,096,495 + -0.2 1,096,935 + -3.8 1,097,170 + HP15_1069 0.32 -0.6 1,097,170 + HP15_1069 0.32 -1.2 1,097,170 + HP15_1069 0.32 -0.7 1,097,178 - HP15_1069 0.33 -6.7 1,097,205 - HP15_1069 0.35 -2.0 1,097,228 - HP15_1069 0.38 -3.2 1,097,243 - HP15_1069 0.39 -2.9 1,097,371 - HP15_1069 0.52 -2.4 1,097,410 + HP15_1069 0.56 -2.1 1,097,410 + HP15_1069 0.56 -3.3 1,097,410 + HP15_1069 0.56 -1.0 1,097,418 - HP15_1069 0.57 -2.9 1,097,434 + HP15_1069 0.59 -1.6 1,097,442 - HP15_1069 0.60 -1.0 1,097,502 + +1.5 1,097,543 - HP15_1069 0.70 -1.5 1,097,660 - HP15_1069 0.82 -1.9
Or see this region's nucleotide sequence