Strain Fitness in Marinobacter adhaerens HP15 around HP15_1019

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1018 and HP15_1019 are separated by 5 nucleotidesHP15_1019 and HP15_1020 overlap by 4 nucleotides HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360 _1018 HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449 _1019 HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071 _1020 Position (kb) 1032 1033 1034 1035 1036Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1031.397 kb on - strand, within HP15_1018at 1031.397 kb on - strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.420 kb on - strand, within HP15_1018at 1031.525 kb on + strand, within HP15_1018at 1031.570 kb on - strand, within HP15_1018at 1031.842 kb on - strand, within HP15_1018at 1031.879 kb on + strand, within HP15_1018at 1032.054 kb on + strand, within HP15_1018at 1032.062 kb on - strand, within HP15_1018at 1032.097 kb on - strand, within HP15_1018at 1032.111 kb on + strand, within HP15_1018at 1032.119 kb on - strand, within HP15_1018at 1032.354 kb on + strandat 1032.372 kb on + strandat 1032.594 kb on - strandat 1032.596 kb on + strandat 1032.661 kb on + strandat 1032.671 kb on + strandat 1032.678 kb on + strand, within HP15_1019at 1032.742 kb on + strand, within HP15_1019at 1032.797 kb on + strand, within HP15_1019at 1032.797 kb on + strand, within HP15_1019at 1032.817 kb on - strand, within HP15_1019at 1032.966 kb on - strand, within HP15_1019at 1033.108 kb on - strand, within HP15_1019at 1033.212 kb on - strand, within HP15_1019at 1033.242 kb on - strand, within HP15_1019at 1033.285 kb on - strand, within HP15_1019at 1033.359 kb on + strand, within HP15_1019at 1033.359 kb on + strand, within HP15_1019at 1033.463 kb on + strand, within HP15_1019at 1033.510 kb on + strand, within HP15_1019at 1033.523 kb on + strand, within HP15_1019at 1033.796 kb on + strand, within HP15_1019at 1033.814 kb on - strand, within HP15_1019at 1033.949 kb on + strand, within HP15_1019at 1033.949 kb on + strand, within HP15_1019at 1034.030 kb on - strand, within HP15_1019at 1034.121 kb on - strand, within HP15_1019at 1034.134 kb on + strand, within HP15_1019at 1034.147 kb on - strand, within HP15_1019at 1034.434 kb on + strand, within HP15_1019at 1034.644 kb on - strand, within HP15_1019at 1034.716 kb on - strand, within HP15_1019at 1034.966 kb on - strand, within HP15_1019at 1034.998 kb on - strand, within HP15_1019at 1035.085 kb on - strand, within HP15_1019at 1035.150 kb on - strandat 1035.274 kb on + strandat 1035.274 kb on + strandat 1035.282 kb on - strandat 1035.310 kb on - strandat 1035.312 kb on + strandat 1035.325 kb on - strandat 1035.325 kb on - strandat 1035.444 kb on + strandat 1035.494 kb on - strandat 1035.544 kb on - strandat 1035.544 kb on - strandat 1035.607 kb on - strandat 1035.724 kb on + strand, within HP15_1020at 1035.857 kb on + strand, within HP15_1020at 1035.913 kb on + strand, within HP15_1020at 1035.925 kb on - strand, within HP15_1020at 1036.094 kb on - strand, within HP15_1020at 1036.094 kb on - strand, within HP15_1020at 1036.096 kb on + strand, within HP15_1020at 1036.203 kb on - strand, within HP15_1020at 1036.426 kb on + strand, within HP15_1020at 1036.432 kb on + strand, within HP15_1020at 1036.435 kb on - strand, within HP15_1020

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
remove
1,031,397 - HP15_1018 0.16 -3.6
1,031,397 - HP15_1018 0.16 -2.0
1,031,412 + HP15_1018 0.17 +0.4
1,031,412 + HP15_1018 0.17 -1.1
1,031,412 + HP15_1018 0.17 -1.9
1,031,412 + HP15_1018 0.17 -0.8
1,031,420 - HP15_1018 0.18 -1.9
1,031,525 + HP15_1018 0.27 -2.2
1,031,570 - HP15_1018 0.31 -2.0
1,031,842 - HP15_1018 0.55 -1.6
1,031,879 + HP15_1018 0.58 -0.7
1,032,054 + HP15_1018 0.73 -0.8
1,032,062 - HP15_1018 0.74 -0.5
1,032,097 - HP15_1018 0.77 -2.2
1,032,111 + HP15_1018 0.78 +0.1
1,032,119 - HP15_1018 0.79 -1.5
1,032,354 + -1.0
1,032,372 + +1.2
1,032,594 - -1.2
1,032,596 + -2.4
1,032,661 + -2.0
1,032,671 + -1.4
1,032,678 + HP15_1019 0.10 -0.5
1,032,742 + HP15_1019 0.12 -1.9
1,032,797 + HP15_1019 0.14 -1.4
1,032,797 + HP15_1019 0.14 -1.2
1,032,817 - HP15_1019 0.15 +0.7
1,032,966 - HP15_1019 0.19 -2.4
1,033,108 - HP15_1019 0.24 +2.5
1,033,212 - HP15_1019 0.27 -2.4
1,033,242 - HP15_1019 0.28 -1.3
1,033,285 - HP15_1019 0.30 -1.4
1,033,359 + HP15_1019 0.32 +1.1
1,033,359 + HP15_1019 0.32 -1.2
1,033,463 + HP15_1019 0.36 +0.2
1,033,510 + HP15_1019 0.37 -0.8
1,033,523 + HP15_1019 0.38 -1.3
1,033,796 + HP15_1019 0.46 -1.6
1,033,814 - HP15_1019 0.47 -1.0
1,033,949 + HP15_1019 0.51 -2.5
1,033,949 + HP15_1019 0.51 -3.0
1,034,030 - HP15_1019 0.54 -2.0
1,034,121 - HP15_1019 0.57 -1.7
1,034,134 + HP15_1019 0.57 -1.0
1,034,147 - HP15_1019 0.58 -2.6
1,034,434 + HP15_1019 0.67 -0.1
1,034,644 - HP15_1019 0.74 -2.0
1,034,716 - HP15_1019 0.76 -3.5
1,034,966 - HP15_1019 0.84 -2.7
1,034,998 - HP15_1019 0.85 +1.2
1,035,085 - HP15_1019 0.88 -0.8
1,035,150 - -1.8
1,035,274 + -1.6
1,035,274 + -0.9
1,035,282 - -2.1
1,035,310 - -0.0
1,035,312 + -1.7
1,035,325 - -3.2
1,035,325 - -1.4
1,035,444 + -0.2
1,035,494 - -0.7
1,035,544 - +0.7
1,035,544 - -0.7
1,035,607 - +0.2
1,035,724 + HP15_1020 0.17 +1.4
1,035,857 + HP15_1020 0.25 -0.6
1,035,913 + HP15_1020 0.29 +0.3
1,035,925 - HP15_1020 0.29 -1.6
1,036,094 - HP15_1020 0.40 +0.4
1,036,094 - HP15_1020 0.40 -0.0
1,036,096 + HP15_1020 0.40 -1.4
1,036,203 - HP15_1020 0.47 +0.5
1,036,426 + HP15_1020 0.60 +0.3
1,036,432 + HP15_1020 0.61 +2.5
1,036,435 - HP15_1020 0.61 +0.7

Or see this region's nucleotide sequence