Strain Fitness in Marinobacter adhaerens HP15 around HP15_1018

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1017 and HP15_1018 are separated by 250 nucleotidesHP15_1018 and HP15_1019 are separated by 5 nucleotides HP15_1017: HP15_1017 - acetolactate synthase, large subunit, biosynthetic type, at 1,029,267 to 1,030,967 _1017 HP15_1018: HP15_1018 - efflux transporter, RND family, MFP subunit, at 1,031,218 to 1,032,360 _1018 HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449 _1019 Position (kb) 1031 1032 1033Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1030.246 kb on - strand, within HP15_1017at 1030.288 kb on + strand, within HP15_1017at 1030.300 kb on + strand, within HP15_1017at 1030.300 kb on + strand, within HP15_1017at 1030.308 kb on - strand, within HP15_1017at 1030.317 kb on + strand, within HP15_1017at 1030.355 kb on + strand, within HP15_1017at 1030.360 kb on + strand, within HP15_1017at 1030.368 kb on - strand, within HP15_1017at 1030.371 kb on - strand, within HP15_1017at 1030.501 kb on + strand, within HP15_1017at 1030.509 kb on - strand, within HP15_1017at 1030.510 kb on + strand, within HP15_1017at 1030.518 kb on - strand, within HP15_1017at 1030.518 kb on - strand, within HP15_1017at 1030.533 kb on - strand, within HP15_1017at 1030.653 kb on + strand, within HP15_1017at 1030.658 kb on + strand, within HP15_1017at 1030.671 kb on - strand, within HP15_1017at 1030.671 kb on - strand, within HP15_1017at 1030.678 kb on - strand, within HP15_1017at 1030.818 kb on + strandat 1030.905 kb on + strandat 1030.905 kb on + strandat 1030.905 kb on + strandat 1030.913 kb on - strandat 1030.913 kb on - strandat 1031.041 kb on + strandat 1031.188 kb on + strandat 1031.218 kb on + strandat 1031.300 kb on + strandat 1031.397 kb on - strand, within HP15_1018at 1031.397 kb on - strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.412 kb on + strand, within HP15_1018at 1031.420 kb on - strand, within HP15_1018at 1031.525 kb on + strand, within HP15_1018at 1031.570 kb on - strand, within HP15_1018at 1031.842 kb on - strand, within HP15_1018at 1031.879 kb on + strand, within HP15_1018at 1032.054 kb on + strand, within HP15_1018at 1032.062 kb on - strand, within HP15_1018at 1032.097 kb on - strand, within HP15_1018at 1032.111 kb on + strand, within HP15_1018at 1032.119 kb on - strand, within HP15_1018at 1032.354 kb on + strandat 1032.372 kb on + strandat 1032.594 kb on - strandat 1032.596 kb on + strandat 1032.661 kb on + strandat 1032.671 kb on + strandat 1032.678 kb on + strand, within HP15_1019at 1032.742 kb on + strand, within HP15_1019at 1032.797 kb on + strand, within HP15_1019at 1032.797 kb on + strand, within HP15_1019at 1032.817 kb on - strand, within HP15_1019at 1032.966 kb on - strand, within HP15_1019at 1033.108 kb on - strand, within HP15_1019at 1033.212 kb on - strand, within HP15_1019at 1033.242 kb on - strand, within HP15_1019at 1033.285 kb on - strand, within HP15_1019at 1033.359 kb on + strand, within HP15_1019at 1033.359 kb on + strand, within HP15_1019

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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1,030,246 - HP15_1017 0.58 +0.4
1,030,288 + HP15_1017 0.60 +0.6
1,030,300 + HP15_1017 0.61 +0.4
1,030,300 + HP15_1017 0.61 +1.1
1,030,308 - HP15_1017 0.61 -0.6
1,030,317 + HP15_1017 0.62 +0.9
1,030,355 + HP15_1017 0.64 +0.6
1,030,360 + HP15_1017 0.64 +0.6
1,030,368 - HP15_1017 0.65 +0.9
1,030,371 - HP15_1017 0.65 -2.0
1,030,501 + HP15_1017 0.73 +0.7
1,030,509 - HP15_1017 0.73 +0.4
1,030,510 + HP15_1017 0.73 -1.2
1,030,518 - HP15_1017 0.74 +1.1
1,030,518 - HP15_1017 0.74 -0.2
1,030,533 - HP15_1017 0.74 +1.2
1,030,653 + HP15_1017 0.81 +0.3
1,030,658 + HP15_1017 0.82 -0.3
1,030,671 - HP15_1017 0.83 +0.2
1,030,671 - HP15_1017 0.83 -0.7
1,030,678 - HP15_1017 0.83 -0.5
1,030,818 + -1.1
1,030,905 + -0.3
1,030,905 + -0.4
1,030,905 + +0.7
1,030,913 - -0.2
1,030,913 - +2.5
1,031,041 + +1.8
1,031,188 + +0.1
1,031,218 + +0.6
1,031,300 + -2.9
1,031,397 - HP15_1018 0.16 -3.6
1,031,397 - HP15_1018 0.16 -2.0
1,031,412 + HP15_1018 0.17 +0.4
1,031,412 + HP15_1018 0.17 -1.1
1,031,412 + HP15_1018 0.17 -1.9
1,031,412 + HP15_1018 0.17 -0.8
1,031,420 - HP15_1018 0.18 -1.9
1,031,525 + HP15_1018 0.27 -2.2
1,031,570 - HP15_1018 0.31 -2.0
1,031,842 - HP15_1018 0.55 -1.6
1,031,879 + HP15_1018 0.58 -0.7
1,032,054 + HP15_1018 0.73 -0.8
1,032,062 - HP15_1018 0.74 -0.5
1,032,097 - HP15_1018 0.77 -2.2
1,032,111 + HP15_1018 0.78 +0.1
1,032,119 - HP15_1018 0.79 -1.5
1,032,354 + -1.0
1,032,372 + +1.2
1,032,594 - -1.2
1,032,596 + -2.4
1,032,661 + -2.0
1,032,671 + -1.4
1,032,678 + HP15_1019 0.10 -0.5
1,032,742 + HP15_1019 0.12 -1.9
1,032,797 + HP15_1019 0.14 -1.4
1,032,797 + HP15_1019 0.14 -1.2
1,032,817 - HP15_1019 0.15 +0.7
1,032,966 - HP15_1019 0.19 -2.4
1,033,108 - HP15_1019 0.24 +2.5
1,033,212 - HP15_1019 0.27 -2.4
1,033,242 - HP15_1019 0.28 -1.3
1,033,285 - HP15_1019 0.30 -1.4
1,033,359 + HP15_1019 0.32 +1.1
1,033,359 + HP15_1019 0.32 -1.2

Or see this region's nucleotide sequence