Strain Fitness in Marinobacter adhaerens HP15 around HP15_1013

Experiment: m.b. Benzalkonium Chloride 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1012 and HP15_1013 are separated by 2 nucleotidesHP15_1013 and HP15_1014 are separated by 55 nucleotidesHP15_1014 and HP15_1015 are separated by 27 nucleotides HP15_1012: HP15_1012 - nitrate transporter component, NrtA, at 1,024,910 to 1,026,331 _1012 HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161 _1013 HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125 _1014 HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596 _1015 Position (kb) 1026 1027 1028Strain fitness (log2 ratio) -1 0 1at 1025.349 kb on + strand, within HP15_1012at 1025.357 kb on - strand, within HP15_1012at 1025.357 kb on - strand, within HP15_1012at 1025.460 kb on - strand, within HP15_1012at 1025.559 kb on - strand, within HP15_1012at 1025.570 kb on - strand, within HP15_1012at 1025.570 kb on - strand, within HP15_1012at 1025.670 kb on - strand, within HP15_1012at 1025.677 kb on + strand, within HP15_1012at 1025.696 kb on + strand, within HP15_1012at 1025.721 kb on + strand, within HP15_1012at 1025.845 kb on - strand, within HP15_1012at 1025.888 kb on + strand, within HP15_1012at 1025.915 kb on + strand, within HP15_1012at 1025.979 kb on + strand, within HP15_1012at 1025.987 kb on - strand, within HP15_1012at 1025.987 kb on - strand, within HP15_1012at 1026.065 kb on + strand, within HP15_1012at 1026.072 kb on + strand, within HP15_1012at 1026.111 kb on + strand, within HP15_1012at 1026.178 kb on + strand, within HP15_1012at 1026.186 kb on - strand, within HP15_1012at 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.230 kb on + strandat 1026.230 kb on + strandat 1026.251 kb on + strandat 1026.278 kb on + strandat 1026.348 kb on + strandat 1026.358 kb on + strandat 1026.436 kb on + strand, within HP15_1013at 1026.439 kb on - strand, within HP15_1013at 1026.538 kb on - strand, within HP15_1013at 1026.575 kb on + strand, within HP15_1013at 1026.593 kb on - strand, within HP15_1013at 1026.607 kb on - strand, within HP15_1013at 1026.612 kb on - strand, within HP15_1013at 1026.729 kb on + strand, within HP15_1013at 1026.738 kb on + strand, within HP15_1013at 1026.740 kb on + strand, within HP15_1013at 1026.747 kb on - strand, within HP15_1013at 1026.748 kb on - strand, within HP15_1013at 1026.855 kb on + strand, within HP15_1013at 1026.888 kb on - strand, within HP15_1013at 1026.915 kb on + strand, within HP15_1013at 1026.940 kb on + strand, within HP15_1013at 1027.057 kb on + strand, within HP15_1013at 1027.060 kb on - strand, within HP15_1013at 1027.062 kb on + strand, within HP15_1013at 1027.065 kb on - strand, within HP15_1013at 1027.115 kb on + strandat 1027.156 kb on + strandat 1027.190 kb on + strandat 1027.199 kb on + strandat 1027.402 kb on - strand, within HP15_1014at 1027.507 kb on + strand, within HP15_1014at 1027.507 kb on + strand, within HP15_1014at 1027.713 kb on - strand, within HP15_1014at 1028.057 kb on - strandat 1028.134 kb on - strandat 1028.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.001 mg/ml
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1,025,349 + HP15_1012 0.31 -1.5
1,025,357 - HP15_1012 0.31 -0.7
1,025,357 - HP15_1012 0.31 -0.3
1,025,460 - HP15_1012 0.39 -0.1
1,025,559 - HP15_1012 0.46 -0.3
1,025,570 - HP15_1012 0.46 +0.6
1,025,570 - HP15_1012 0.46 +0.3
1,025,670 - HP15_1012 0.53 -0.6
1,025,677 + HP15_1012 0.54 +0.8
1,025,696 + HP15_1012 0.55 +0.1
1,025,721 + HP15_1012 0.57 +0.2
1,025,845 - HP15_1012 0.66 +1.6
1,025,888 + HP15_1012 0.69 -0.5
1,025,915 + HP15_1012 0.71 -0.3
1,025,979 + HP15_1012 0.75 +0.9
1,025,987 - HP15_1012 0.76 +0.8
1,025,987 - HP15_1012 0.76 +0.5
1,026,065 + HP15_1012 0.81 -0.4
1,026,072 + HP15_1012 0.82 +0.2
1,026,111 + HP15_1012 0.84 +0.1
1,026,178 + HP15_1012 0.89 +1.0
1,026,186 - HP15_1012 0.90 -1.0
1,026,228 - -0.3
1,026,228 - -0.1
1,026,228 - +1.1
1,026,228 - -0.8
1,026,230 + +0.9
1,026,230 + +0.2
1,026,251 + +0.3
1,026,278 + -0.8
1,026,348 + +0.1
1,026,358 + -1.0
1,026,436 + HP15_1013 0.12 -0.7
1,026,439 - HP15_1013 0.13 -0.6
1,026,538 - HP15_1013 0.25 +1.3
1,026,575 + HP15_1013 0.29 +0.7
1,026,593 - HP15_1013 0.31 -0.1
1,026,607 - HP15_1013 0.33 +0.1
1,026,612 - HP15_1013 0.34 +0.4
1,026,729 + HP15_1013 0.48 +0.7
1,026,738 + HP15_1013 0.49 +0.2
1,026,740 + HP15_1013 0.49 -1.1
1,026,747 - HP15_1013 0.50 +0.3
1,026,748 - HP15_1013 0.50 -0.1
1,026,855 + HP15_1013 0.63 +0.4
1,026,888 - HP15_1013 0.67 +0.6
1,026,915 + HP15_1013 0.70 +0.5
1,026,940 + HP15_1013 0.73 -0.6
1,027,057 + HP15_1013 0.87 +0.3
1,027,060 - HP15_1013 0.88 +0.2
1,027,062 + HP15_1013 0.88 +1.5
1,027,065 - HP15_1013 0.88 +0.9
1,027,115 + -0.7
1,027,156 + +0.0
1,027,190 + -0.5
1,027,199 + +0.8
1,027,402 - HP15_1014 0.20 -1.3
1,027,507 + HP15_1014 0.32 +1.0
1,027,507 + HP15_1014 0.32 +0.3
1,027,713 - HP15_1014 0.55 -0.3
1,028,057 - +1.5
1,028,134 - -0.1
1,028,134 - +0.4

Or see this region's nucleotide sequence