Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3012 and Dsui_3013 are separated by 500 nucleotides Dsui_3013 and Dsui_3014 are separated by 9 nucleotides Dsui_3014 and Dsui_3015 overlap by 4 nucleotides
Dsui_3012: Dsui_3012 - hydrogenase (NiFe) small subunit HydA, at 3,225,772 to 3,226,953
_3012
Dsui_3013: Dsui_3013 - hypothetical protein, at 3,227,454 to 3,229,295
_3013
Dsui_3014: Dsui_3014 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 3,229,305 to 3,230,024
_3014
Dsui_3015: Dsui_3015 - hypothetical protein, at 3,230,021 to 3,230,548
_3015
Position (kb)
3227
3228
3229
3230 Strain fitness (log2 ratio)
-1
0
1 at 3226.557 kb on + strand at 3226.565 kb on + strand, within Dsui_3012 at 3226.883 kb on + strand at 3227.439 kb on + strand at 3227.451 kb on - strand at 3227.464 kb on - strand at 3227.510 kb on + strand at 3227.580 kb on - strand at 3227.649 kb on - strand, within Dsui_3013 at 3227.696 kb on + strand at 3227.914 kb on - strand, within Dsui_3013 at 3228.014 kb on + strand, within Dsui_3013 at 3228.189 kb on + strand, within Dsui_3013 at 3228.321 kb on + strand, within Dsui_3013 at 3228.353 kb on + strand, within Dsui_3013 at 3228.361 kb on - strand at 3228.507 kb on - strand at 3228.682 kb on - strand, within Dsui_3013 at 3228.789 kb on + strand, within Dsui_3013 at 3228.832 kb on - strand, within Dsui_3013 at 3229.021 kb on + strand, within Dsui_3013 at 3229.094 kb on - strand at 3229.115 kb on + strand at 3229.140 kb on + strand at 3229.181 kb on + strand at 3229.195 kb on - strand at 3229.230 kb on + strand at 3229.270 kb on - strand at 3229.290 kb on + strand at 3229.315 kb on - strand at 3229.351 kb on + strand at 3229.409 kb on - strand, within Dsui_3014 at 3229.452 kb on - strand at 3229.710 kb on + strand, within Dsui_3014 at 3229.802 kb on - strand at 3229.862 kb on + strand at 3229.870 kb on - strand at 3229.969 kb on - strand at 3229.989 kb on + strand at 3229.990 kb on - strand at 3230.050 kb on - strand at 3230.262 kb on - strand at 3230.266 kb on + strand at 3230.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 3,226,557 + +0.2 3,226,565 + Dsui_3012 0.67 -1.1 3,226,883 + -0.8 3,227,439 + +0.3 3,227,451 - -0.7 3,227,464 - -0.4 3,227,510 + +0.4 3,227,580 - -0.1 3,227,649 - Dsui_3013 0.11 -1.5 3,227,696 + -0.0 3,227,914 - Dsui_3013 0.25 -0.9 3,228,014 + Dsui_3013 0.30 +0.1 3,228,189 + Dsui_3013 0.40 -0.5 3,228,321 + Dsui_3013 0.47 +0.5 3,228,353 + Dsui_3013 0.49 +0.4 3,228,361 - +1.0 3,228,507 - +0.7 3,228,682 - Dsui_3013 0.67 -0.4 3,228,789 + Dsui_3013 0.72 +0.1 3,228,832 - Dsui_3013 0.75 -1.0 3,229,021 + Dsui_3013 0.85 -0.4 3,229,094 - +1.3 3,229,115 + +0.4 3,229,140 + +0.6 3,229,181 + -0.3 3,229,195 - -0.4 3,229,230 + -0.1 3,229,270 - -0.4 3,229,290 + -0.4 3,229,315 - +0.2 3,229,351 + -0.2 3,229,409 - Dsui_3014 0.14 -0.6 3,229,452 - -0.1 3,229,710 + Dsui_3014 0.56 +0.6 3,229,802 - +0.3 3,229,862 + -0.7 3,229,870 - +0.4 3,229,969 - -0.3 3,229,989 + -0.2 3,229,990 - +0.7 3,230,050 - +0.2 3,230,262 - -1.7 3,230,266 + -0.3 3,230,280 - +1.7
Or see this region's nucleotide sequence