Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2967 and Dsui_2968 overlap by 4 nucleotides Dsui_2968 and Dsui_2969 overlap by 4 nucleotides Dsui_2969 and Dsui_2970 are separated by 13 nucleotides
Dsui_2967: Dsui_2967 - precorrin-3B C17-methyltransferase, at 3,174,272 to 3,175,267
_2967
Dsui_2968: Dsui_2968 - ferredoxin, at 3,175,264 to 3,175,602
_2968
Dsui_2969: Dsui_2969 - uroporphyrin-III C-methyltransferase, at 3,175,599 to 3,176,366
_2969
Dsui_2970: Dsui_2970 - putative Fe-S oxidoreductase, at 3,176,380 to 3,176,670
_2970
Position (kb)
3175
3176 Strain fitness (log2 ratio)
-1
0
1 at 3174.299 kb on + strand at 3174.306 kb on - strand at 3174.476 kb on + strand, within Dsui_2967 at 3174.505 kb on - strand, within Dsui_2967 at 3174.505 kb on - strand, within Dsui_2967 at 3174.694 kb on - strand at 3174.777 kb on - strand at 3174.791 kb on + strand, within Dsui_2967 at 3174.796 kb on + strand, within Dsui_2967 at 3174.802 kb on + strand, within Dsui_2967 at 3174.805 kb on - strand at 3174.967 kb on + strand, within Dsui_2967 at 3175.014 kb on + strand, within Dsui_2967 at 3175.022 kb on - strand, within Dsui_2967 at 3175.028 kb on + strand, within Dsui_2967 at 3175.028 kb on + strand, within Dsui_2967 at 3175.036 kb on - strand, within Dsui_2967 at 3175.065 kb on - strand, within Dsui_2967 at 3175.115 kb on + strand, within Dsui_2967 at 3175.137 kb on - strand, within Dsui_2967 at 3175.243 kb on + strand at 3175.327 kb on - strand, within Dsui_2968 at 3175.336 kb on + strand, within Dsui_2968 at 3175.350 kb on + strand, within Dsui_2968 at 3175.360 kb on - strand at 3175.383 kb on + strand, within Dsui_2968 at 3175.391 kb on - strand, within Dsui_2968 at 3175.427 kb on - strand, within Dsui_2968 at 3175.520 kb on + strand, within Dsui_2968 at 3175.522 kb on - strand, within Dsui_2968 at 3175.597 kb on - strand at 3175.690 kb on + strand at 3175.713 kb on + strand, within Dsui_2969 at 3175.828 kb on + strand, within Dsui_2969 at 3175.975 kb on + strand, within Dsui_2969 at 3176.067 kb on + strand, within Dsui_2969 at 3176.102 kb on - strand, within Dsui_2969 at 3176.173 kb on + strand, within Dsui_2969 at 3176.253 kb on - strand, within Dsui_2969 at 3176.269 kb on + strand, within Dsui_2969 at 3176.406 kb on + strand at 3176.414 kb on - strand, within Dsui_2970 at 3176.436 kb on + strand, within Dsui_2970 at 3176.479 kb on - strand, within Dsui_2970 at 3176.526 kb on + strand, within Dsui_2970
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 3,174,299 + -0.1 3,174,306 - -0.6 3,174,476 + Dsui_2967 0.20 -0.0 3,174,505 - Dsui_2967 0.23 -0.5 3,174,505 - Dsui_2967 0.23 +0.4 3,174,694 - +0.6 3,174,777 - -0.1 3,174,791 + Dsui_2967 0.52 -0.4 3,174,796 + Dsui_2967 0.53 -0.7 3,174,802 + Dsui_2967 0.53 -0.5 3,174,805 - +0.2 3,174,967 + Dsui_2967 0.70 -1.1 3,175,014 + Dsui_2967 0.74 -0.4 3,175,022 - Dsui_2967 0.75 -0.4 3,175,028 + Dsui_2967 0.76 -0.6 3,175,028 + Dsui_2967 0.76 +0.7 3,175,036 - Dsui_2967 0.77 -0.5 3,175,065 - Dsui_2967 0.80 +0.0 3,175,115 + Dsui_2967 0.85 +0.5 3,175,137 - Dsui_2967 0.87 -0.4 3,175,243 + -0.2 3,175,327 - Dsui_2968 0.19 -0.3 3,175,336 + Dsui_2968 0.21 -0.7 3,175,350 + Dsui_2968 0.25 -0.2 3,175,360 - -1.2 3,175,383 + Dsui_2968 0.35 -1.4 3,175,391 - Dsui_2968 0.37 -1.7 3,175,427 - Dsui_2968 0.48 +0.1 3,175,520 + Dsui_2968 0.76 -0.1 3,175,522 - Dsui_2968 0.76 +0.3 3,175,597 - -1.4 3,175,690 + -0.6 3,175,713 + Dsui_2969 0.15 +0.5 3,175,828 + Dsui_2969 0.30 -0.1 3,175,975 + Dsui_2969 0.49 +0.1 3,176,067 + Dsui_2969 0.61 +0.1 3,176,102 - Dsui_2969 0.65 -0.5 3,176,173 + Dsui_2969 0.75 -0.6 3,176,253 - Dsui_2969 0.85 +0.1 3,176,269 + Dsui_2969 0.87 -0.9 3,176,406 + -0.3 3,176,414 - Dsui_2970 0.12 -0.0 3,176,436 + Dsui_2970 0.19 -0.1 3,176,479 - Dsui_2970 0.34 +0.4 3,176,526 + Dsui_2970 0.50 -0.3
Or see this region's nucleotide sequence