Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2530 and Dsui_2531 overlap by 20 nucleotides Dsui_2531 and Dsui_2532 are separated by 93 nucleotides Dsui_2532 and Dsui_2533 are separated by 70 nucleotides Dsui_2533 and Dsui_2534 overlap by 4 nucleotides
Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234
_2530
Dsui_2531: Dsui_2531 - uncharacterized protein, YfiH family, at 2,683,215 to 2,683,964
_2531
Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083
_2532
Dsui_2533: Dsui_2533 - TRAP-type C4-dicarboxylate transport system, small permease component, at 2,685,154 to 2,685,639
_2533
Dsui_2534: Dsui_2534 - TRAP transporter, DctM subunit, at 2,685,636 to 2,686,925
_2534
Position (kb)
2684
2685
2686 Strain fitness (log2 ratio)
-2
-1
0
1 at 2683.084 kb on + strand, within Dsui_2530 at 2683.263 kb on + strand at 2683.266 kb on - strand at 2683.320 kb on + strand, within Dsui_2531 at 2683.451 kb on + strand, within Dsui_2531 at 2683.573 kb on + strand, within Dsui_2531 at 2683.667 kb on + strand, within Dsui_2531 at 2683.942 kb on + strand at 2683.958 kb on + strand at 2684.097 kb on - strand at 2684.230 kb on - strand at 2684.273 kb on + strand, within Dsui_2532 at 2684.298 kb on - strand at 2684.404 kb on - strand, within Dsui_2532 at 2684.487 kb on + strand, within Dsui_2532 at 2684.556 kb on + strand, within Dsui_2532 at 2684.566 kb on - strand, within Dsui_2532 at 2684.680 kb on - strand, within Dsui_2532 at 2684.732 kb on + strand, within Dsui_2532 at 2684.746 kb on - strand at 2684.756 kb on - strand at 2684.765 kb on - strand, within Dsui_2532 at 2684.806 kb on - strand at 2684.868 kb on + strand, within Dsui_2532 at 2685.006 kb on + strand at 2685.047 kb on - strand at 2685.226 kb on + strand, within Dsui_2533 at 2685.234 kb on - strand, within Dsui_2533 at 2685.325 kb on + strand, within Dsui_2533 at 2685.438 kb on - strand at 2685.466 kb on + strand, within Dsui_2533 at 2685.532 kb on - strand, within Dsui_2533 at 2685.585 kb on + strand, within Dsui_2533 at 2685.636 kb on - strand at 2685.699 kb on + strand at 2685.744 kb on + strand at 2685.852 kb on + strand, within Dsui_2534 at 2685.855 kb on - strand, within Dsui_2534 at 2685.921 kb on + strand, within Dsui_2534
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 2,683,084 + Dsui_2530 0.87 -0.3 2,683,263 + -0.6 2,683,266 - +1.0 2,683,320 + Dsui_2531 0.14 -0.2 2,683,451 + Dsui_2531 0.31 -0.1 2,683,573 + Dsui_2531 0.48 +0.1 2,683,667 + Dsui_2531 0.60 +0.3 2,683,942 + +0.4 2,683,958 + +0.2 2,684,097 - +1.3 2,684,230 - -0.1 2,684,273 + Dsui_2532 0.21 +0.6 2,684,298 - -1.2 2,684,404 - Dsui_2532 0.34 -0.7 2,684,487 + Dsui_2532 0.42 -1.8 2,684,556 + Dsui_2532 0.49 +0.3 2,684,566 - Dsui_2532 0.50 -0.8 2,684,680 - Dsui_2532 0.61 +0.1 2,684,732 + Dsui_2532 0.66 -1.0 2,684,746 - -0.5 2,684,756 - +0.0 2,684,765 - Dsui_2532 0.69 -0.9 2,684,806 - -0.3 2,684,868 + Dsui_2532 0.79 +0.1 2,685,006 + -0.3 2,685,047 - +0.0 2,685,226 + Dsui_2533 0.15 +0.4 2,685,234 - Dsui_2533 0.16 +0.0 2,685,325 + Dsui_2533 0.35 -0.5 2,685,438 - -0.3 2,685,466 + Dsui_2533 0.64 +0.1 2,685,532 - Dsui_2533 0.78 +0.0 2,685,585 + Dsui_2533 0.89 -0.6 2,685,636 - -1.2 2,685,699 + +0.5 2,685,744 + -0.3 2,685,852 + Dsui_2534 0.17 -0.3 2,685,855 - Dsui_2534 0.17 -0.0 2,685,921 + Dsui_2534 0.22 -0.4
Or see this region's nucleotide sequence