Strain Fitness in Dechlorosoma suillum PS around Dsui_2525

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2523 and Dsui_2524 are separated by 49 nucleotidesDsui_2524 and Dsui_2525 overlap by 20 nucleotidesDsui_2525 and Dsui_2526 are separated by 191 nucleotidesDsui_2526 and Dsui_2527 overlap by 4 nucleotides Dsui_2523: Dsui_2523 - hypothetical protein, at 2,674,075 to 2,674,617 _2523 Dsui_2524: Dsui_2524 - putative conserved small protein, at 2,674,667 to 2,675,002 _2524 Dsui_2525: Dsui_2525 - phage-related protein, at 2,674,983 to 2,675,360 _2525 Dsui_2526: Dsui_2526 - site-specific recombinase, DNA invertase Pin, at 2,675,552 to 2,676,145 _2526 Dsui_2527: Dsui_2527 - transposase, TnpA family, at 2,676,142 to 2,679,174 _2527 Position (kb) 2674 2675 2676Strain fitness (log2 ratio) -2 -1 0 1 2at 2673.986 kb on + strandat 2674.132 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.146 kb on + strand, within Dsui_2523at 2674.183 kb on + strand, within Dsui_2523at 2674.272 kb on + strand, within Dsui_2523at 2674.353 kb on + strand, within Dsui_2523at 2674.366 kb on - strand, within Dsui_2523at 2674.373 kb on + strand, within Dsui_2523at 2674.404 kb on - strand, within Dsui_2523at 2674.503 kb on + strand, within Dsui_2523at 2675.074 kb on - strand, within Dsui_2525at 2675.109 kb on + strand, within Dsui_2525at 2675.151 kb on - strand, within Dsui_2525at 2675.255 kb on - strand, within Dsui_2525at 2675.342 kb on + strandat 2675.350 kb on - strandat 2675.368 kb on + strandat 2675.452 kb on - strandat 2675.546 kb on - strandat 2675.569 kb on - strandat 2675.590 kb on - strandat 2675.593 kb on + strandat 2675.611 kb on - strandat 2675.631 kb on - strand, within Dsui_2526at 2675.732 kb on + strand, within Dsui_2526at 2675.833 kb on + strand, within Dsui_2526at 2675.921 kb on - strand, within Dsui_2526at 2676.040 kb on + strand, within Dsui_2526at 2676.077 kb on + strand, within Dsui_2526at 2676.092 kb on - strandat 2676.104 kb on - strandat 2676.201 kb on - strandat 2676.247 kb on - strandat 2676.251 kb on - strandat 2676.300 kb on + strandat 2676.335 kb on - strandat 2676.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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2,673,986 + +0.3
2,674,132 + Dsui_2523 0.10 -0.0
2,674,146 + Dsui_2523 0.13 +0.0
2,674,146 + Dsui_2523 0.13 -0.1
2,674,183 + Dsui_2523 0.20 -0.3
2,674,272 + Dsui_2523 0.36 +2.3
2,674,353 + Dsui_2523 0.51 +0.6
2,674,366 - Dsui_2523 0.54 -0.2
2,674,373 + Dsui_2523 0.55 -1.2
2,674,404 - Dsui_2523 0.61 +0.1
2,674,503 + Dsui_2523 0.79 -0.3
2,675,074 - Dsui_2525 0.24 -0.2
2,675,109 + Dsui_2525 0.33 -0.9
2,675,151 - Dsui_2525 0.44 +0.0
2,675,255 - Dsui_2525 0.72 -0.3
2,675,342 + -1.8
2,675,350 - -0.4
2,675,368 + -0.6
2,675,452 - -1.2
2,675,546 - +0.6
2,675,569 - +0.6
2,675,590 - -0.3
2,675,593 + +0.0
2,675,611 - +0.4
2,675,631 - Dsui_2526 0.13 +0.5
2,675,732 + Dsui_2526 0.30 -0.2
2,675,833 + Dsui_2526 0.47 +0.0
2,675,921 - Dsui_2526 0.62 +0.3
2,676,040 + Dsui_2526 0.82 -0.0
2,676,077 + Dsui_2526 0.88 -0.4
2,676,092 - +0.6
2,676,104 - -0.3
2,676,201 - +0.3
2,676,247 - -0.6
2,676,251 - -0.3
2,676,300 + -0.5
2,676,335 - +0.1
2,676,335 - -0.9

Or see this region's nucleotide sequence