Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1881 and Dsui_1882 are separated by 62 nucleotides Dsui_1882 and Dsui_1883 are separated by 103 nucleotides
Dsui_1881: Dsui_1881 - methyl-accepting chemotaxis protein, at 1,978,041 to 1,980,077
_1881
Dsui_1882: Dsui_1882 - hypothetical protein, at 1,980,140 to 1,980,637
_1882
Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663
_1883
Position (kb)
1980
1981 Strain fitness (log2 ratio)
-1
0
1 at 1979.196 kb on + strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.211 kb on - strand, within Dsui_1881 at 1979.539 kb on + strand, within Dsui_1881 at 1979.782 kb on + strand, within Dsui_1881 at 1979.790 kb on - strand, within Dsui_1881 at 1979.897 kb on - strand at 1979.911 kb on + strand at 1979.919 kb on - strand at 1979.984 kb on - strand at 1980.000 kb on - strand at 1980.032 kb on - strand at 1980.062 kb on - strand at 1980.174 kb on - strand at 1980.268 kb on + strand, within Dsui_1882 at 1980.302 kb on + strand, within Dsui_1882 at 1980.305 kb on - strand, within Dsui_1882 at 1980.404 kb on - strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.585 kb on + strand, within Dsui_1882 at 1980.647 kb on - strand at 1980.702 kb on + strand at 1980.883 kb on - strand at 1980.889 kb on - strand at 1980.973 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.021 kb on + strand, within Dsui_1883 at 1981.120 kb on - strand, within Dsui_1883 at 1981.147 kb on - strand, within Dsui_1883 at 1981.160 kb on + strand, within Dsui_1883 at 1981.362 kb on - strand, within Dsui_1883 at 1981.362 kb on - strand, within Dsui_1883 at 1981.556 kb on - strand, within Dsui_1883
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 1,979,196 + Dsui_1881 0.57 +1.3 1,979,211 - Dsui_1881 0.57 -0.1 1,979,211 - Dsui_1881 0.57 -0.5 1,979,539 + Dsui_1881 0.74 -0.6 1,979,782 + Dsui_1881 0.85 +0.3 1,979,790 - Dsui_1881 0.86 +0.1 1,979,897 - +0.0 1,979,911 + -0.2 1,979,919 - -0.0 1,979,984 - -0.3 1,980,000 - -0.7 1,980,032 - +0.7 1,980,062 - +0.2 1,980,174 - -0.1 1,980,268 + Dsui_1882 0.26 -0.2 1,980,302 + Dsui_1882 0.33 -0.5 1,980,305 - Dsui_1882 0.33 -0.9 1,980,404 - Dsui_1882 0.53 -0.2 1,980,585 + Dsui_1882 0.89 -0.2 1,980,585 + Dsui_1882 0.89 -0.2 1,980,647 - +0.1 1,980,702 + +1.7 1,980,883 - -0.3 1,980,889 - +0.9 1,980,973 + Dsui_1883 0.12 -0.2 1,981,021 + Dsui_1883 0.15 -0.3 1,981,021 + Dsui_1883 0.15 -0.8 1,981,120 - Dsui_1883 0.20 -0.1 1,981,147 - Dsui_1883 0.21 +0.3 1,981,160 + Dsui_1883 0.22 +0.3 1,981,362 - Dsui_1883 0.32 -0.2 1,981,362 - Dsui_1883 0.32 +1.0 1,981,556 - Dsui_1883 0.42 -0.1
Or see this region's nucleotide sequence