Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1845 and Dsui_1846 are separated by 101 nucleotides Dsui_1846 and Dsui_1847 are separated by 61 nucleotides Dsui_1847 and Dsui_1848 overlap by 17 nucleotides
Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360
_1845
Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622
_1846
Dsui_1847: Dsui_1847 - acetyltransferase, N-acetylglutamate synthase, at 1,942,684 to 1,943,136
_1847
Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175
_1848
Position (kb)
1941
1942
1943 Strain fitness (log2 ratio)
-1
0
1 at 1940.485 kb on - strand, within Dsui_1845 at 1940.664 kb on - strand at 1940.718 kb on + strand at 1940.718 kb on + strand at 1940.897 kb on - strand, within Dsui_1845 at 1940.962 kb on + strand, within Dsui_1845 at 1941.061 kb on + strand at 1941.069 kb on - strand, within Dsui_1845 at 1941.096 kb on - strand, within Dsui_1845 at 1941.189 kb on - strand, within Dsui_1845 at 1941.573 kb on - strand at 1941.606 kb on - strand, within Dsui_1846 at 1941.717 kb on - strand, within Dsui_1846 at 1941.735 kb on - strand, within Dsui_1846 at 1941.769 kb on - strand, within Dsui_1846 at 1941.781 kb on - strand, within Dsui_1846 at 1941.886 kb on + strand at 1941.955 kb on - strand, within Dsui_1846 at 1942.021 kb on - strand, within Dsui_1846 at 1942.044 kb on + strand, within Dsui_1846 at 1942.052 kb on - strand, within Dsui_1846 at 1942.053 kb on - strand, within Dsui_1846 at 1942.131 kb on + strand, within Dsui_1846 at 1942.162 kb on - strand, within Dsui_1846 at 1942.309 kb on - strand, within Dsui_1846 at 1942.336 kb on + strand, within Dsui_1846 at 1942.391 kb on + strand at 1942.816 kb on + strand at 1942.897 kb on - strand, within Dsui_1847 at 1942.903 kb on - strand at 1942.942 kb on + strand, within Dsui_1847 at 1943.031 kb on + strand at 1943.058 kb on + strand at 1943.058 kb on + strand at 1943.066 kb on - strand, within Dsui_1847 at 1943.097 kb on - strand at 1943.136 kb on + strand at 1943.213 kb on + strand at 1943.299 kb on - strand, within Dsui_1848 at 1943.463 kb on - strand at 1943.608 kb on + strand at 1943.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 1,940,485 - Dsui_1845 0.16 +0.7 1,940,664 - -0.1 1,940,718 + -1.1 1,940,718 + -0.5 1,940,897 - Dsui_1845 0.56 -0.0 1,940,962 + Dsui_1845 0.62 -0.2 1,941,061 + +0.4 1,941,069 - Dsui_1845 0.72 +0.7 1,941,096 - Dsui_1845 0.75 +0.7 1,941,189 - Dsui_1845 0.84 -0.0 1,941,573 - -0.2 1,941,606 - Dsui_1846 0.12 -0.5 1,941,717 - Dsui_1846 0.22 -0.4 1,941,735 - Dsui_1846 0.24 -0.8 1,941,769 - Dsui_1846 0.26 -0.3 1,941,781 - Dsui_1846 0.27 -0.4 1,941,886 + -0.0 1,941,955 - Dsui_1846 0.42 -0.4 1,942,021 - Dsui_1846 0.48 -0.2 1,942,044 + Dsui_1846 0.50 -1.0 1,942,052 - Dsui_1846 0.51 -0.4 1,942,053 - Dsui_1846 0.51 -0.4 1,942,131 + Dsui_1846 0.58 -0.7 1,942,162 - Dsui_1846 0.60 -0.3 1,942,309 - Dsui_1846 0.73 -0.8 1,942,336 + Dsui_1846 0.75 -1.7 1,942,391 + -1.3 1,942,816 + +1.5 1,942,897 - Dsui_1847 0.47 +0.1 1,942,903 - +0.1 1,942,942 + Dsui_1847 0.57 +0.1 1,943,031 + -1.4 1,943,058 + +0.3 1,943,058 + -0.0 1,943,066 - Dsui_1847 0.84 -0.1 1,943,097 - +0.7 1,943,136 + +0.0 1,943,213 + -0.1 1,943,299 - Dsui_1848 0.17 +0.1 1,943,463 - -0.3 1,943,608 + -1.6 1,943,621 - +0.4
Or see this region's nucleotide sequence