Strain Fitness in Dechlorosoma suillum PS around Dsui_1846

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1845 and Dsui_1846 are separated by 101 nucleotidesDsui_1846 and Dsui_1847 are separated by 61 nucleotidesDsui_1847 and Dsui_1848 overlap by 17 nucleotides Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360 _1845 Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622 _1846 Dsui_1847: Dsui_1847 - acetyltransferase, N-acetylglutamate synthase, at 1,942,684 to 1,943,136 _1847 Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175 _1848 Position (kb) 1941 1942 1943Strain fitness (log2 ratio) -1 0 1at 1940.485 kb on - strand, within Dsui_1845at 1940.664 kb on - strandat 1940.718 kb on + strandat 1940.718 kb on + strandat 1940.897 kb on - strand, within Dsui_1845at 1940.962 kb on + strand, within Dsui_1845at 1941.061 kb on + strandat 1941.069 kb on - strand, within Dsui_1845at 1941.096 kb on - strand, within Dsui_1845at 1941.189 kb on - strand, within Dsui_1845at 1941.573 kb on - strandat 1941.606 kb on - strand, within Dsui_1846at 1941.717 kb on - strand, within Dsui_1846at 1941.735 kb on - strand, within Dsui_1846at 1941.769 kb on - strand, within Dsui_1846at 1941.781 kb on - strand, within Dsui_1846at 1941.886 kb on + strandat 1941.955 kb on - strand, within Dsui_1846at 1942.021 kb on - strand, within Dsui_1846at 1942.044 kb on + strand, within Dsui_1846at 1942.052 kb on - strand, within Dsui_1846at 1942.053 kb on - strand, within Dsui_1846at 1942.131 kb on + strand, within Dsui_1846at 1942.162 kb on - strand, within Dsui_1846at 1942.309 kb on - strand, within Dsui_1846at 1942.336 kb on + strand, within Dsui_1846at 1942.391 kb on + strandat 1942.816 kb on + strandat 1942.897 kb on - strand, within Dsui_1847at 1942.903 kb on - strandat 1942.942 kb on + strand, within Dsui_1847at 1943.031 kb on + strandat 1943.058 kb on + strandat 1943.058 kb on + strandat 1943.066 kb on - strand, within Dsui_1847at 1943.097 kb on - strandat 1943.136 kb on + strandat 1943.213 kb on + strandat 1943.299 kb on - strand, within Dsui_1848at 1943.463 kb on - strandat 1943.608 kb on + strandat 1943.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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1,940,485 - Dsui_1845 0.16 +0.7
1,940,664 - -0.1
1,940,718 + -1.1
1,940,718 + -0.5
1,940,897 - Dsui_1845 0.56 -0.0
1,940,962 + Dsui_1845 0.62 -0.2
1,941,061 + +0.4
1,941,069 - Dsui_1845 0.72 +0.7
1,941,096 - Dsui_1845 0.75 +0.7
1,941,189 - Dsui_1845 0.84 -0.0
1,941,573 - -0.2
1,941,606 - Dsui_1846 0.12 -0.5
1,941,717 - Dsui_1846 0.22 -0.4
1,941,735 - Dsui_1846 0.24 -0.8
1,941,769 - Dsui_1846 0.26 -0.3
1,941,781 - Dsui_1846 0.27 -0.4
1,941,886 + -0.0
1,941,955 - Dsui_1846 0.42 -0.4
1,942,021 - Dsui_1846 0.48 -0.2
1,942,044 + Dsui_1846 0.50 -1.0
1,942,052 - Dsui_1846 0.51 -0.4
1,942,053 - Dsui_1846 0.51 -0.4
1,942,131 + Dsui_1846 0.58 -0.7
1,942,162 - Dsui_1846 0.60 -0.3
1,942,309 - Dsui_1846 0.73 -0.8
1,942,336 + Dsui_1846 0.75 -1.7
1,942,391 + -1.3
1,942,816 + +1.5
1,942,897 - Dsui_1847 0.47 +0.1
1,942,903 - +0.1
1,942,942 + Dsui_1847 0.57 +0.1
1,943,031 + -1.4
1,943,058 + +0.3
1,943,058 + -0.0
1,943,066 - Dsui_1847 0.84 -0.1
1,943,097 - +0.7
1,943,136 + +0.0
1,943,213 + -0.1
1,943,299 - Dsui_1848 0.17 +0.1
1,943,463 - -0.3
1,943,608 + -1.6
1,943,621 - +0.4

Or see this region's nucleotide sequence