Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0801 and Dsui_0802 are separated by 18 nucleotides Dsui_0802 and Dsui_0803 are separated by 117 nucleotides
Dsui_0801: Dsui_0801 - transcriptional regulator/sugar kinase, at 807,188 to 808,078
_0801
Dsui_0802: Dsui_0802 - hypothetical protein, at 808,097 to 808,798
_0802
Dsui_0803: Dsui_0803 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 808,916 to 811,168
_0803
Position (kb) 808
809 Strain fitness (log2 ratio) -1
0
1 at 807.170 kb on - strand at 807.178 kb on + strand at 807.186 kb on - strand at 807.228 kb on - strand at 807.328 kb on - strand, within Dsui_0801 at 807.344 kb on + strand, within Dsui_0801 at 807.460 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.510 kb on + strand, within Dsui_0801 at 807.582 kb on - strand, within Dsui_0801 at 807.604 kb on - strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.880 kb on + strand, within Dsui_0801 at 807.888 kb on - strand, within Dsui_0801 at 807.889 kb on - strand at 807.955 kb on - strand at 807.955 kb on - strand, within Dsui_0801 at 807.976 kb on + strand, within Dsui_0801 at 807.994 kb on - strand at 808.011 kb on + strand at 808.021 kb on + strand at 808.132 kb on + strand at 808.153 kb on - strand at 808.186 kb on - strand, within Dsui_0802 at 808.214 kb on - strand, within Dsui_0802 at 808.340 kb on - strand, within Dsui_0802 at 808.341 kb on + strand, within Dsui_0802 at 808.382 kb on - strand, within Dsui_0802 at 808.393 kb on - strand at 808.393 kb on - strand, within Dsui_0802 at 808.624 kb on - strand, within Dsui_0802 at 808.671 kb on - strand, within Dsui_0802 at 808.691 kb on - strand, within Dsui_0802 at 808.776 kb on + strand at 808.879 kb on - strand at 808.891 kb on + strand at 808.923 kb on - strand at 808.940 kb on + strand at 808.946 kb on + strand at 809.005 kb on + strand at 809.012 kb on + strand at 809.020 kb on - strand at 809.030 kb on - strand at 809.134 kb on + strand at 809.161 kb on + strand, within Dsui_0803 at 809.169 kb on - strand at 809.169 kb on - strand, within Dsui_0803 at 809.193 kb on + strand, within Dsui_0803 at 809.201 kb on - strand at 809.257 kb on + strand, within Dsui_0803 at 809.295 kb on + strand, within Dsui_0803 at 809.335 kb on + strand, within Dsui_0803 at 809.389 kb on - strand, within Dsui_0803 at 809.427 kb on + strand, within Dsui_0803 at 809.469 kb on + strand, within Dsui_0803 at 809.470 kb on - strand, within Dsui_0803 at 809.494 kb on - strand, within Dsui_0803 at 809.529 kb on - strand, within Dsui_0803 at 809.529 kb on - strand at 809.529 kb on - strand, within Dsui_0803 at 809.531 kb on + strand, within Dsui_0803 at 809.605 kb on - strand, within Dsui_0803 at 809.606 kb on - strand, within Dsui_0803 at 809.621 kb on + strand, within Dsui_0803 at 809.626 kb on + strand, within Dsui_0803 at 809.634 kb on - strand, within Dsui_0803 at 809.644 kb on + strand, within Dsui_0803 at 809.685 kb on + strand, within Dsui_0803 at 809.728 kb on - strand, within Dsui_0803 at 809.785 kb on + strand, within Dsui_0803
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 807,170 - -0.3 807,178 + +0.1 807,186 - +0.1 807,228 - -0.1 807,328 - Dsui_0801 0.16 -0.9 807,344 + Dsui_0801 0.18 +0.0 807,460 + Dsui_0801 0.31 -0.1 807,510 + Dsui_0801 0.36 +0.3 807,510 + Dsui_0801 0.36 +0.3 807,510 + Dsui_0801 0.36 +0.6 807,582 - Dsui_0801 0.44 -0.0 807,604 - Dsui_0801 0.47 -0.1 807,880 + Dsui_0801 0.78 -0.2 807,880 + Dsui_0801 0.78 -0.0 807,888 - Dsui_0801 0.79 -0.1 807,889 - -0.1 807,955 - -0.9 807,955 - Dsui_0801 0.86 +0.2 807,976 + Dsui_0801 0.88 -0.2 807,994 - -0.8 808,011 + -0.3 808,021 + -0.1 808,132 + +0.3 808,153 - -0.2 808,186 - Dsui_0802 0.13 -0.3 808,214 - Dsui_0802 0.17 +0.1 808,340 - Dsui_0802 0.35 -0.2 808,341 + Dsui_0802 0.35 +0.3 808,382 - Dsui_0802 0.41 -0.3 808,393 - +0.1 808,393 - Dsui_0802 0.42 -1.4 808,624 - Dsui_0802 0.75 -0.0 808,671 - Dsui_0802 0.82 -1.5 808,691 - Dsui_0802 0.85 -0.1 808,776 + +0.3 808,879 - +0.7 808,891 + -0.9 808,923 - -0.4 808,940 + +1.3 808,946 + -0.2 809,005 + +0.1 809,012 + -1.3 809,020 - +0.2 809,030 - -0.4 809,134 + -0.5 809,161 + Dsui_0803 0.11 +0.1 809,169 - -0.3 809,169 - Dsui_0803 0.11 -0.2 809,193 + Dsui_0803 0.12 -0.3 809,201 - -0.0 809,257 + Dsui_0803 0.15 -0.5 809,295 + Dsui_0803 0.17 +0.2 809,335 + Dsui_0803 0.19 +0.5 809,389 - Dsui_0803 0.21 -0.1 809,427 + Dsui_0803 0.23 +0.5 809,469 + Dsui_0803 0.25 +0.4 809,470 - Dsui_0803 0.25 -0.4 809,494 - Dsui_0803 0.26 +0.3 809,529 - Dsui_0803 0.27 -0.2 809,529 - -1.0 809,529 - Dsui_0803 0.27 +0.2 809,531 + Dsui_0803 0.27 +0.4 809,605 - Dsui_0803 0.31 -0.1 809,606 - Dsui_0803 0.31 -1.1 809,621 + Dsui_0803 0.31 +0.1 809,626 + Dsui_0803 0.32 -0.4 809,634 - Dsui_0803 0.32 -0.4 809,644 + Dsui_0803 0.32 +0.3 809,685 + Dsui_0803 0.34 +0.1 809,728 - Dsui_0803 0.36 +0.2 809,785 + Dsui_0803 0.39 -0.3
Or see this region's nucleotide sequence