Strain Fitness in Dechlorosoma suillum PS around Dsui_0268

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0267 and Dsui_0268 are separated by 48 nucleotidesDsui_0268 and Dsui_0269 are separated by 9 nucleotides Dsui_0267: Dsui_0267 - multidrug resistance efflux pump, at 266,722 to 267,708 _0267 Dsui_0268: Dsui_0268 - ABC-type multidrug transport system, ATPase component, at 267,757 to 270,513 _0268 Dsui_0269: Dsui_0269 - ABC-type multidrug transport system, permease component, at 270,523 to 271,659 _0269 Position (kb) 267 268 269 270 271Strain fitness (log2 ratio) -2 -1 0 1at 266.951 kb on + strand, within Dsui_0267at 267.149 kb on + strand, within Dsui_0267at 267.202 kb on + strand, within Dsui_0267at 267.210 kb on - strandat 267.249 kb on + strand, within Dsui_0267at 267.249 kb on + strand, within Dsui_0267at 267.257 kb on - strand, within Dsui_0267at 267.264 kb on - strand, within Dsui_0267at 267.367 kb on + strand, within Dsui_0267at 267.434 kb on + strand, within Dsui_0267at 267.707 kb on + strandat 267.823 kb on - strandat 267.918 kb on - strandat 267.947 kb on - strandat 267.973 kb on + strandat 268.035 kb on - strand, within Dsui_0268at 268.047 kb on + strand, within Dsui_0268at 268.055 kb on - strandat 268.115 kb on - strandat 268.231 kb on + strand, within Dsui_0268at 268.353 kb on - strandat 268.478 kb on + strand, within Dsui_0268at 268.599 kb on - strand, within Dsui_0268at 268.740 kb on + strand, within Dsui_0268at 268.740 kb on + strand, within Dsui_0268at 268.743 kb on - strand, within Dsui_0268at 268.748 kb on - strand, within Dsui_0268at 268.840 kb on - strand, within Dsui_0268at 268.847 kb on - strand, within Dsui_0268at 269.017 kb on + strand, within Dsui_0268at 269.085 kb on + strand, within Dsui_0268at 269.085 kb on + strand, within Dsui_0268at 269.093 kb on - strand, within Dsui_0268at 269.093 kb on - strand, within Dsui_0268at 269.093 kb on - strand, within Dsui_0268at 269.111 kb on + strand, within Dsui_0268at 269.190 kb on - strand, within Dsui_0268at 269.462 kb on + strand, within Dsui_0268at 269.533 kb on - strand, within Dsui_0268at 269.617 kb on - strand, within Dsui_0268at 269.797 kb on + strand, within Dsui_0268at 269.860 kb on + strand, within Dsui_0268at 269.863 kb on - strandat 269.865 kb on + strand, within Dsui_0268at 269.873 kb on - strandat 269.874 kb on - strand, within Dsui_0268at 270.014 kb on + strand, within Dsui_0268at 270.032 kb on - strand, within Dsui_0268at 270.042 kb on - strandat 270.088 kb on - strand, within Dsui_0268at 270.135 kb on - strand, within Dsui_0268at 270.186 kb on + strand, within Dsui_0268at 270.194 kb on - strandat 270.209 kb on + strand, within Dsui_0268at 270.209 kb on + strand, within Dsui_0268at 270.217 kb on - strand, within Dsui_0268at 270.217 kb on - strand, within Dsui_0268at 270.240 kb on + strandat 270.360 kb on - strandat 270.360 kb on - strandat 270.409 kb on + strandat 270.414 kb on + strandat 270.455 kb on + strandat 270.463 kb on - strandat 270.705 kb on + strand, within Dsui_0269at 270.705 kb on - strand, within Dsui_0269at 270.750 kb on + strand, within Dsui_0269at 270.818 kb on + strand, within Dsui_0269at 270.918 kb on - strand, within Dsui_0269at 270.918 kb on - strand, within Dsui_0269at 271.029 kb on + strand, within Dsui_0269at 271.067 kb on + strand, within Dsui_0269at 271.171 kb on + strand, within Dsui_0269at 271.179 kb on - strand, within Dsui_0269at 271.189 kb on - strand, within Dsui_0269at 271.203 kb on + strand, within Dsui_0269at 271.211 kb on - strand, within Dsui_0269at 271.329 kb on - strand, within Dsui_0269at 271.340 kb on - strand, within Dsui_0269at 271.383 kb on + strand, within Dsui_0269at 271.412 kb on + strand, within Dsui_0269

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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266,951 + Dsui_0267 0.23 +0.0
267,149 + Dsui_0267 0.43 -0.1
267,202 + Dsui_0267 0.49 -0.3
267,210 - -0.6
267,249 + Dsui_0267 0.53 -0.7
267,249 + Dsui_0267 0.53 -0.8
267,257 - Dsui_0267 0.54 -0.4
267,264 - Dsui_0267 0.55 -1.1
267,367 + Dsui_0267 0.65 -0.2
267,434 + Dsui_0267 0.72 -0.2
267,707 + -0.1
267,823 - -0.4
267,918 - -0.5
267,947 - -0.5
267,973 + -0.4
268,035 - Dsui_0268 0.10 -0.2
268,047 + Dsui_0268 0.11 -0.5
268,055 - +0.5
268,115 - -1.2
268,231 + Dsui_0268 0.17 -0.1
268,353 - +0.0
268,478 + Dsui_0268 0.26 -0.3
268,599 - Dsui_0268 0.31 +0.2
268,740 + Dsui_0268 0.36 -0.2
268,740 + Dsui_0268 0.36 -0.8
268,743 - Dsui_0268 0.36 -0.4
268,748 - Dsui_0268 0.36 +0.0
268,840 - Dsui_0268 0.39 -0.1
268,847 - Dsui_0268 0.40 -0.3
269,017 + Dsui_0268 0.46 -0.2
269,085 + Dsui_0268 0.48 -0.3
269,085 + Dsui_0268 0.48 -0.7
269,093 - Dsui_0268 0.48 -0.0
269,093 - Dsui_0268 0.48 +0.4
269,093 - Dsui_0268 0.48 -0.8
269,111 + Dsui_0268 0.49 -0.6
269,190 - Dsui_0268 0.52 -0.7
269,462 + Dsui_0268 0.62 -0.7
269,533 - Dsui_0268 0.64 -0.5
269,617 - Dsui_0268 0.67 +0.1
269,797 + Dsui_0268 0.74 -0.4
269,860 + Dsui_0268 0.76 -0.0
269,863 - -0.4
269,865 + Dsui_0268 0.76 -0.1
269,873 - -1.4
269,874 - Dsui_0268 0.77 -0.7
270,014 + Dsui_0268 0.82 +0.1
270,032 - Dsui_0268 0.83 -0.4
270,042 - -0.1
270,088 - Dsui_0268 0.85 -1.3
270,135 - Dsui_0268 0.86 -0.8
270,186 + Dsui_0268 0.88 +0.2
270,194 - -2.4
270,209 + Dsui_0268 0.89 -0.2
270,209 + Dsui_0268 0.89 -0.4
270,217 - Dsui_0268 0.89 -0.3
270,217 - Dsui_0268 0.89 -0.5
270,240 + -0.2
270,360 - -0.3
270,360 - -0.1
270,409 + +0.4
270,414 + +0.1
270,455 + +0.1
270,463 - -0.3
270,705 + Dsui_0269 0.16 -0.8
270,705 - Dsui_0269 0.16 -0.6
270,750 + Dsui_0269 0.20 -0.4
270,818 + Dsui_0269 0.26 -0.8
270,918 - Dsui_0269 0.35 -1.1
270,918 - Dsui_0269 0.35 -0.6
271,029 + Dsui_0269 0.45 -1.3
271,067 + Dsui_0269 0.48 -1.0
271,171 + Dsui_0269 0.57 -1.3
271,179 - Dsui_0269 0.58 -0.3
271,189 - Dsui_0269 0.59 +0.1
271,203 + Dsui_0269 0.60 -0.7
271,211 - Dsui_0269 0.61 -0.1
271,329 - Dsui_0269 0.71 +0.2
271,340 - Dsui_0269 0.72 +0.0
271,383 + Dsui_0269 0.76 -0.1
271,412 + Dsui_0269 0.78 -0.5

Or see this region's nucleotide sequence