Experiment: Anaerobic growth in rich media with perchlorate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0177 and Dsui_0178 are separated by 28 nucleotides Dsui_0178 and Dsui_0179 are separated by 15 nucleotides Dsui_0179 and Dsui_0180 are separated by 1 nucleotides Dsui_0180 and Dsui_0181 are separated by 180 nucleotides Dsui_0181 and Dsui_0182 are separated by 393 nucleotides
Dsui_0177: Dsui_0177 - hypothetical protein, at 180,760 to 181,641
_0177
Dsui_0178: Dsui_0178 - hypothetical protein, at 181,670 to 182,509
_0178
Dsui_0179: Dsui_0179 - hypothetical protein, at 182,525 to 182,614
_0179
Dsui_0180: Dsui_0180 - hypothetical protein, at 182,616 to 182,885
_0180
Dsui_0181: Dsui_0181 - hypothetical protein, at 183,066 to 183,296
_0181
Dsui_0182: Dsui_0182 - hypothetical protein, at 183,690 to 184,331
_0182
Position (kb) 182
183 Strain fitness (log2 ratio) -2
-1
0
1 at 181.643 kb on + strand at 181.651 kb on - strand at 181.653 kb on + strand at 181.704 kb on + strand at 181.716 kb on + strand at 181.774 kb on - strand, within Dsui_0178 at 181.829 kb on - strand at 181.861 kb on + strand, within Dsui_0178 at 181.869 kb on - strand, within Dsui_0178 at 182.114 kb on + strand, within Dsui_0178 at 182.191 kb on + strand, within Dsui_0178 at 182.191 kb on + strand, within Dsui_0178 at 182.280 kb on + strand, within Dsui_0178 at 182.546 kb on + strand, within Dsui_0179 at 182.546 kb on + strand, within Dsui_0179 at 182.681 kb on + strand, within Dsui_0180 at 182.681 kb on + strand, within Dsui_0180 at 182.708 kb on - strand, within Dsui_0180 at 182.756 kb on - strand, within Dsui_0180 at 182.764 kb on - strand, within Dsui_0180 at 183.045 kb on + strand at 183.089 kb on - strand, within Dsui_0181 at 183.210 kb on + strand, within Dsui_0181 at 183.315 kb on + strand at 183.336 kb on + strand at 183.344 kb on - strand at 183.428 kb on - strand at 183.501 kb on + strand at 183.540 kb on + strand at 183.545 kb on + strand at 183.590 kb on - strand at 183.619 kb on - strand at 183.622 kb on + strand at 183.634 kb on + strand at 183.743 kb on - strand at 183.743 kb on - strand at 183.762 kb on - strand, within Dsui_0182 at 183.768 kb on - strand, within Dsui_0182 at 183.768 kb on - strand, within Dsui_0182 at 183.773 kb on - strand, within Dsui_0182 at 183.786 kb on + strand, within Dsui_0182 at 183.848 kb on - strand, within Dsui_0182 at 183.861 kb on + strand, within Dsui_0182 at 183.863 kb on + strand, within Dsui_0182
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor remove 181,643 + -0.3 181,651 - -0.1 181,653 + +0.2 181,704 + -0.2 181,716 + +0.0 181,774 - Dsui_0178 0.12 +0.1 181,829 - +0.8 181,861 + Dsui_0178 0.23 -0.0 181,869 - Dsui_0178 0.24 +0.1 182,114 + Dsui_0178 0.53 -0.3 182,191 + Dsui_0178 0.62 +0.4 182,191 + Dsui_0178 0.62 +0.3 182,280 + Dsui_0178 0.73 +0.1 182,546 + Dsui_0179 0.23 +0.2 182,546 + Dsui_0179 0.23 +0.7 182,681 + Dsui_0180 0.24 +0.6 182,681 + Dsui_0180 0.24 -0.4 182,708 - Dsui_0180 0.34 -0.8 182,756 - Dsui_0180 0.52 -0.3 182,764 - Dsui_0180 0.55 +0.1 183,045 + +0.6 183,089 - Dsui_0181 0.10 -0.2 183,210 + Dsui_0181 0.62 +0.3 183,315 + +0.5 183,336 + -0.9 183,344 - -0.1 183,428 - +0.1 183,501 + -0.1 183,540 + -0.1 183,545 + -0.7 183,590 - -0.3 183,619 - -0.3 183,622 + +0.7 183,634 + -0.1 183,743 - +0.5 183,743 - +0.3 183,762 - Dsui_0182 0.11 +0.4 183,768 - Dsui_0182 0.12 -1.9 183,768 - Dsui_0182 0.12 +0.2 183,773 - Dsui_0182 0.13 -0.1 183,786 + Dsui_0182 0.15 -0.9 183,848 - Dsui_0182 0.25 -0.4 183,861 + Dsui_0182 0.27 -0.5 183,863 + Dsui_0182 0.27 +0.3
Or see this region's nucleotide sequence