Strain Fitness in Dechlorosoma suillum PS around Dsui_0012

Experiment: Anaerobic growth in rich media with perchlorate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0011 and Dsui_0012 are separated by 221 nucleotidesDsui_0012 and Dsui_0013 are separated by 1 nucleotidesDsui_0013 and Dsui_0014 are separated by 496 nucleotides Dsui_0011: Dsui_0011 - isocitrate lyase, at 9,345 to 10,655 _0011 Dsui_0012: Dsui_0012 - putative permease, DMT superfamily, at 10,877 to 11,764 _0012 Dsui_0013: Dsui_0013 - Thioredoxin, at 11,766 to 12,266 _0013 Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377 _0014 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1at 9.928 kb on + strand, within Dsui_0011at 9.965 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.018 kb on - strand, within Dsui_0011at 10.035 kb on - strand, within Dsui_0011at 10.040 kb on - strand, within Dsui_0011at 10.057 kb on + strand, within Dsui_0011at 10.065 kb on - strand, within Dsui_0011at 10.150 kb on + strand, within Dsui_0011at 10.158 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.258 kb on - strand, within Dsui_0011at 10.297 kb on - strand, within Dsui_0011at 10.371 kb on + strand, within Dsui_0011at 10.432 kb on + strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.456 kb on - strand, within Dsui_0011at 10.467 kb on + strand, within Dsui_0011at 10.531 kb on - strandat 10.614 kb on - strandat 10.625 kb on - strandat 10.625 kb on - strandat 10.690 kb on - strandat 10.748 kb on - strandat 10.773 kb on + strandat 10.773 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.781 kb on - strandat 10.833 kb on - strandat 10.854 kb on + strandat 10.867 kb on + strandat 10.867 kb on + strandat 10.875 kb on - strandat 11.015 kb on - strand, within Dsui_0012at 11.021 kb on - strandat 11.045 kb on + strand, within Dsui_0012at 11.105 kb on - strand, within Dsui_0012at 11.110 kb on - strand, within Dsui_0012at 11.163 kb on - strand, within Dsui_0012at 11.255 kb on - strand, within Dsui_0012at 11.267 kb on - strand, within Dsui_0012at 11.274 kb on - strand, within Dsui_0012at 11.343 kb on + strand, within Dsui_0012at 11.408 kb on + strand, within Dsui_0012at 11.428 kb on - strand, within Dsui_0012at 11.434 kb on + strand, within Dsui_0012at 11.471 kb on + strand, within Dsui_0012at 11.524 kb on - strandat 11.536 kb on + strand, within Dsui_0012at 11.536 kb on + strand, within Dsui_0012at 11.547 kb on + strand, within Dsui_0012at 11.550 kb on - strand, within Dsui_0012at 11.598 kb on + strand, within Dsui_0012at 11.610 kb on - strandat 11.610 kb on - strand, within Dsui_0012at 11.666 kb on - strand, within Dsui_0012at 11.676 kb on + strandat 11.714 kb on + strandat 11.727 kb on - strandat 11.759 kb on + strandat 11.767 kb on - strandat 11.772 kb on - strandat 11.951 kb on + strandat 11.983 kb on - strand, within Dsui_0013at 12.306 kb on + strandat 12.374 kb on + strandat 12.604 kb on - strandat 12.609 kb on - strandat 12.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with perchlorate electron acceptor
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9,928 + Dsui_0011 0.44 +0.4
9,965 - Dsui_0011 0.47 +0.5
10,018 - Dsui_0011 0.51 +0.3
10,018 - Dsui_0011 0.51 +0.2
10,035 - Dsui_0011 0.53 -0.1
10,040 - Dsui_0011 0.53 +0.5
10,057 + Dsui_0011 0.54 -0.5
10,065 - Dsui_0011 0.55 -1.0
10,150 + Dsui_0011 0.61 -0.3
10,158 - Dsui_0011 0.62 +0.3
10,258 - Dsui_0011 0.70 -0.1
10,258 - Dsui_0011 0.70 -0.0
10,297 - Dsui_0011 0.73 +0.0
10,371 + Dsui_0011 0.78 -0.2
10,432 + Dsui_0011 0.83 -0.3
10,456 - Dsui_0011 0.85 -0.0
10,456 - Dsui_0011 0.85 +0.1
10,467 + Dsui_0011 0.86 +0.2
10,531 - -0.3
10,614 - +0.3
10,625 - -0.6
10,625 - -0.3
10,690 - -0.1
10,748 - -0.4
10,773 + +0.2
10,773 - +0.3
10,781 - -0.2
10,781 - +0.2
10,781 - -0.3
10,781 - -0.4
10,781 - -0.1
10,781 - -0.5
10,833 - +0.2
10,854 + +0.3
10,867 + -0.8
10,867 + -1.0
10,875 - -1.2
11,015 - Dsui_0012 0.16 +0.4
11,021 - +0.9
11,045 + Dsui_0012 0.19 -0.5
11,105 - Dsui_0012 0.26 -0.1
11,110 - Dsui_0012 0.26 +0.3
11,163 - Dsui_0012 0.32 -0.4
11,255 - Dsui_0012 0.43 -0.3
11,267 - Dsui_0012 0.44 +0.8
11,274 - Dsui_0012 0.45 -1.0
11,343 + Dsui_0012 0.52 +0.4
11,408 + Dsui_0012 0.60 -0.5
11,428 - Dsui_0012 0.62 -0.5
11,434 + Dsui_0012 0.63 +0.0
11,471 + Dsui_0012 0.67 +0.0
11,524 - +0.4
11,536 + Dsui_0012 0.74 -0.5
11,536 + Dsui_0012 0.74 -0.4
11,547 + Dsui_0012 0.75 -0.4
11,550 - Dsui_0012 0.76 -2.1
11,598 + Dsui_0012 0.81 -2.1
11,610 - +0.2
11,610 - Dsui_0012 0.83 -0.1
11,666 - Dsui_0012 0.89 -0.5
11,676 + +0.2
11,714 + +0.2
11,727 - -0.1
11,759 + -0.3
11,767 - -0.3
11,772 - -0.1
11,951 + +0.4
11,983 - Dsui_0013 0.43 -0.1
12,306 + -1.9
12,374 + -0.2
12,604 - +1.6
12,609 - +0.0
12,711 - +0.5

Or see this region's nucleotide sequence