Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3863 and Dshi_3864 are separated by 16 nucleotides Dshi_3864 and Dshi_3865 are separated by 122 nucleotides Dshi_3865 and Dshi_3866 are separated by 111 nucleotides
Dshi_3863: Dshi_3863 - hypothetical protein (RefSeq), at 72,755 to 73,885
_3863
Dshi_3864: Dshi_3864 - sulfotransferase (RefSeq), at 73,902 to 74,681
_3864
Dshi_3865: Dshi_3865 - hypothetical protein (RefSeq), at 74,804 to 75,793
_3865
Dshi_3866: Dshi_3866 - glycosyl transferase group 1 (RefSeq), at 75,905 to 79,813
_3866
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 73.857 kb on - strand at 73.937 kb on + strand at 74.006 kb on + strand, within Dshi_3864 at 74.079 kb on + strand, within Dshi_3864 at 74.122 kb on - strand, within Dshi_3864 at 74.138 kb on - strand, within Dshi_3864 at 74.262 kb on - strand, within Dshi_3864 at 74.471 kb on + strand, within Dshi_3864 at 74.538 kb on - strand, within Dshi_3864 at 74.549 kb on + strand, within Dshi_3864 at 74.549 kb on + strand, within Dshi_3864 at 74.574 kb on + strand, within Dshi_3864 at 74.576 kb on + strand, within Dshi_3864 at 74.625 kb on - strand at 74.685 kb on + strand at 74.693 kb on - strand at 74.694 kb on - strand at 74.694 kb on - strand at 74.793 kb on - strand at 74.862 kb on + strand at 74.914 kb on + strand, within Dshi_3865 at 74.954 kb on - strand, within Dshi_3865 at 75.023 kb on + strand, within Dshi_3865 at 75.078 kb on + strand, within Dshi_3865 at 75.086 kb on - strand, within Dshi_3865 at 75.252 kb on - strand, within Dshi_3865 at 75.278 kb on - strand, within Dshi_3865 at 75.291 kb on - strand, within Dshi_3865 at 75.376 kb on - strand, within Dshi_3865 at 75.376 kb on - strand, within Dshi_3865 at 75.479 kb on + strand, within Dshi_3865 at 75.485 kb on - strand, within Dshi_3865 at 75.487 kb on - strand, within Dshi_3865 at 75.499 kb on + strand, within Dshi_3865 at 75.542 kb on - strand, within Dshi_3865 at 75.578 kb on + strand, within Dshi_3865 at 75.604 kb on + strand, within Dshi_3865 at 75.604 kb on + strand, within Dshi_3865 at 75.624 kb on + strand, within Dshi_3865 at 75.668 kb on - strand, within Dshi_3865 at 75.773 kb on - strand at 75.792 kb on + strand at 75.910 kb on - strand at 75.969 kb on + strand at 76.099 kb on + strand at 76.172 kb on + strand at 76.273 kb on + strand at 76.401 kb on - strand, within Dshi_3866 at 76.408 kb on + strand, within Dshi_3866 at 76.522 kb on + strand, within Dshi_3866 at 76.530 kb on - strand, within Dshi_3866 at 76.587 kb on - strand, within Dshi_3866 at 76.621 kb on - strand, within Dshi_3866 at 76.698 kb on + strand, within Dshi_3866 at 76.777 kb on + strand, within Dshi_3866 at 76.777 kb on + strand, within Dshi_3866 at 76.784 kb on - strand, within Dshi_3866 at 76.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 73,857 - +0.6 73,937 + -0.3 74,006 + Dshi_3864 0.13 +0.9 74,079 + Dshi_3864 0.23 -1.5 74,122 - Dshi_3864 0.28 -1.0 74,138 - Dshi_3864 0.30 -2.3 74,262 - Dshi_3864 0.46 -1.1 74,471 + Dshi_3864 0.73 -0.3 74,538 - Dshi_3864 0.82 +0.4 74,549 + Dshi_3864 0.83 -0.4 74,549 + Dshi_3864 0.83 -0.2 74,574 + Dshi_3864 0.86 +0.2 74,576 + Dshi_3864 0.86 -0.7 74,625 - +0.6 74,685 + -0.3 74,693 - -0.9 74,694 - -0.5 74,694 - -0.9 74,793 - -0.8 74,862 + -0.8 74,914 + Dshi_3865 0.11 -0.5 74,954 - Dshi_3865 0.15 -0.4 75,023 + Dshi_3865 0.22 -1.1 75,078 + Dshi_3865 0.28 -1.3 75,086 - Dshi_3865 0.28 -1.2 75,252 - Dshi_3865 0.45 -2.4 75,278 - Dshi_3865 0.48 -0.3 75,291 - Dshi_3865 0.49 -1.0 75,376 - Dshi_3865 0.58 -0.1 75,376 - Dshi_3865 0.58 -1.1 75,479 + Dshi_3865 0.68 -2.9 75,485 - Dshi_3865 0.69 -1.4 75,487 - Dshi_3865 0.69 -2.4 75,499 + Dshi_3865 0.70 -0.8 75,542 - Dshi_3865 0.75 -0.4 75,578 + Dshi_3865 0.78 -0.1 75,604 + Dshi_3865 0.81 -1.1 75,604 + Dshi_3865 0.81 -1.4 75,624 + Dshi_3865 0.83 -0.1 75,668 - Dshi_3865 0.87 -2.0 75,773 - -0.6 75,792 + -0.5 75,910 - -0.9 75,969 + +2.2 76,099 + +1.5 76,172 + +1.0 76,273 + +1.7 76,401 - Dshi_3866 0.13 +1.9 76,408 + Dshi_3866 0.13 +1.5 76,522 + Dshi_3866 0.16 +1.1 76,530 - Dshi_3866 0.16 +1.5 76,587 - Dshi_3866 0.17 +1.7 76,621 - Dshi_3866 0.18 +1.8 76,698 + Dshi_3866 0.20 +2.0 76,777 + Dshi_3866 0.22 +1.4 76,777 + Dshi_3866 0.22 +1.7 76,784 - Dshi_3866 0.22 +2.2 76,785 - +3.8
Or see this region's nucleotide sequence