Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07070

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07050 and PGA1_c07060 are separated by 165 nucleotidesPGA1_c07060 and PGA1_c07070 overlap by 4 nucleotidesPGA1_c07070 and PGA1_c07080 are separated by 53 nucleotidesPGA1_c07080 and PGA1_c07090 are separated by 129 nucleotides PGA1_c07050: PGA1_c07050 - methyltransferase domain-containing protein, at 725,097 to 725,732 _c07050 PGA1_c07060: PGA1_c07060 - YtoQ family protein, at 725,898 to 726,347 _c07060 PGA1_c07070: PGA1_c07070 - acetyltransferase domain-containing protein, at 726,344 to 726,871 _c07070 PGA1_c07080: PGA1_c07080 - small-conductance mechanosensitive channel, at 726,925 to 727,731 _c07080 PGA1_c07090: PGA1_c07090 - large-conductance mechanosensitive channel, at 727,861 to 728,295 _c07090 Position (kb) 726 727Strain fitness (log2 ratio) -3 -2 -1 0 1at 725.373 kb on - strand, within PGA1_c07050at 725.390 kb on - strand, within PGA1_c07050at 725.422 kb on + strand, within PGA1_c07050at 725.430 kb on - strand, within PGA1_c07050at 725.489 kb on - strand, within PGA1_c07050at 725.532 kb on + strand, within PGA1_c07050at 725.597 kb on + strand, within PGA1_c07050at 725.751 kb on + strandat 725.769 kb on - strandat 725.769 kb on - strandat 725.793 kb on - strandat 725.802 kb on + strandat 725.836 kb on + strandat 725.867 kb on + strandat 725.954 kb on - strand, within PGA1_c07060at 725.984 kb on + strand, within PGA1_c07060at 725.992 kb on - strand, within PGA1_c07060at 726.086 kb on + strand, within PGA1_c07060at 726.089 kb on - strand, within PGA1_c07060at 726.094 kb on - strand, within PGA1_c07060at 726.111 kb on - strand, within PGA1_c07060at 726.154 kb on + strand, within PGA1_c07060at 726.201 kb on - strand, within PGA1_c07060at 726.217 kb on - strand, within PGA1_c07060at 726.224 kb on + strand, within PGA1_c07060at 726.232 kb on - strand, within PGA1_c07060at 726.440 kb on - strand, within PGA1_c07070at 726.448 kb on + strand, within PGA1_c07070at 726.479 kb on - strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.481 kb on + strand, within PGA1_c07070at 726.521 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.549 kb on + strand, within PGA1_c07070at 726.647 kb on + strand, within PGA1_c07070at 726.668 kb on + strand, within PGA1_c07070at 726.674 kb on + strand, within PGA1_c07070at 726.698 kb on - strand, within PGA1_c07070at 726.801 kb on - strand, within PGA1_c07070at 726.801 kb on - strand, within PGA1_c07070at 726.989 kb on - strandat 727.026 kb on + strand, within PGA1_c07080at 727.040 kb on + strand, within PGA1_c07080at 727.048 kb on - strand, within PGA1_c07080at 727.095 kb on + strand, within PGA1_c07080at 727.227 kb on - strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.253 kb on + strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.261 kb on - strand, within PGA1_c07080at 727.295 kb on + strand, within PGA1_c07080at 727.328 kb on - strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.374 kb on + strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.382 kb on - strand, within PGA1_c07080at 727.443 kb on + strand, within PGA1_c07080at 727.451 kb on - strand, within PGA1_c07080at 727.463 kb on + strand, within PGA1_c07080at 727.463 kb on - strand, within PGA1_c07080at 727.549 kb on - strand, within PGA1_c07080at 727.622 kb on - strand, within PGA1_c07080at 727.627 kb on + strand, within PGA1_c07080at 727.657 kb on + strandat 727.703 kb on + strandat 727.713 kb on + strandat 727.721 kb on - strandat 727.830 kb on - strandat 727.839 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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725,373 - PGA1_c07050 0.43 -0.7
725,390 - PGA1_c07050 0.46 +0.5
725,422 + PGA1_c07050 0.51 +1.2
725,430 - PGA1_c07050 0.52 -2.2
725,489 - PGA1_c07050 0.62 +0.3
725,532 + PGA1_c07050 0.68 -0.6
725,597 + PGA1_c07050 0.79 -0.6
725,751 + +1.1
725,769 - -0.9
725,769 - -3.0
725,793 - +0.6
725,802 + -1.2
725,836 + +0.0
725,867 + +1.2
725,954 - PGA1_c07060 0.12 +0.3
725,984 + PGA1_c07060 0.19 +1.4
725,992 - PGA1_c07060 0.21 +0.8
726,086 + PGA1_c07060 0.42 +1.2
726,089 - PGA1_c07060 0.42 +1.6
726,094 - PGA1_c07060 0.44 +0.3
726,111 - PGA1_c07060 0.47 +0.3
726,154 + PGA1_c07060 0.57 -1.3
726,201 - PGA1_c07060 0.67 -0.3
726,217 - PGA1_c07060 0.71 -0.9
726,224 + PGA1_c07060 0.72 -1.1
726,232 - PGA1_c07060 0.74 -0.7
726,440 - PGA1_c07070 0.18 +0.0
726,448 + PGA1_c07070 0.20 +0.2
726,479 - PGA1_c07070 0.26 -0.2
726,481 + PGA1_c07070 0.26 +0.4
726,481 + PGA1_c07070 0.26 +1.0
726,521 + PGA1_c07070 0.34 -2.0
726,549 + PGA1_c07070 0.39 -3.1
726,549 + PGA1_c07070 0.39 -0.1
726,647 + PGA1_c07070 0.57 +0.2
726,668 + PGA1_c07070 0.61 -2.5
726,674 + PGA1_c07070 0.62 -1.5
726,698 - PGA1_c07070 0.67 -0.3
726,801 - PGA1_c07070 0.87 -2.3
726,801 - PGA1_c07070 0.87 -0.3
726,989 - -2.1
727,026 + PGA1_c07080 0.13 -0.5
727,040 + PGA1_c07080 0.14 +0.9
727,048 - PGA1_c07080 0.15 +0.2
727,095 + PGA1_c07080 0.21 -0.3
727,227 - PGA1_c07080 0.37 +1.2
727,253 + PGA1_c07080 0.41 -3.2
727,253 + PGA1_c07080 0.41 +1.2
727,253 + PGA1_c07080 0.41 -1.9
727,253 + PGA1_c07080 0.41 -0.7
727,253 + PGA1_c07080 0.41 -0.9
727,261 - PGA1_c07080 0.42 +0.1
727,261 - PGA1_c07080 0.42 -0.3
727,261 - PGA1_c07080 0.42 +0.0
727,295 + PGA1_c07080 0.46 -0.5
727,328 - PGA1_c07080 0.50 +0.7
727,374 + PGA1_c07080 0.56 +0.2
727,374 + PGA1_c07080 0.56 -0.3
727,382 - PGA1_c07080 0.57 -3.3
727,382 - PGA1_c07080 0.57 -0.6
727,382 - PGA1_c07080 0.57 +0.4
727,382 - PGA1_c07080 0.57 +0.7
727,382 - PGA1_c07080 0.57 -3.3
727,443 + PGA1_c07080 0.64 -1.0
727,451 - PGA1_c07080 0.65 +1.0
727,463 + PGA1_c07080 0.67 +0.9
727,463 - PGA1_c07080 0.67 -0.1
727,549 - PGA1_c07080 0.77 -1.5
727,622 - PGA1_c07080 0.86 +1.0
727,627 + PGA1_c07080 0.87 +0.9
727,657 + -1.9
727,703 + -3.1
727,713 + -1.6
727,721 - -0.8
727,830 - -0.4
727,839 + -0.7

Or see this region's nucleotide sequence